Evidence map›Paper›PMID 34155279›Full record

ArticleScientific reports2021

Genome-enabled discovery of evolutionary divergence in brains and behavior.

Chinar Patil, Jonathan B Sylvester, Kawther Abdilleh, Michael W Norsworthy, Karen Pottin, Milan Malinsky, Ryan F Bloomquist, Zachary V Johnson, Patrick T McGrath, Jeffrey T Streelman

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The neuroecology of the water-to-land transition and the evolution of the vertebrate brain.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chinar PatilSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA. cpatil6@gatech.edu.
Jonathan B SylvesterSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.
Kawther AbdillehSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.
Michael W NorsworthyCatalog Technologies Inc., Boston, MA, USA.
Karen PottinLaboratoire de Biologie du Dévelopement (IBPS-LBD, UMR7622), CNRS, Institut de Biologie Paris Seine, Sorbonne Université, Paris, France.
Milan MalinskyDepartment of Environmental Sciences, Zoological Institute, University of Basel, Basel, Switzerland.
Ryan F BloomquistSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.
Zachary V JohnsonSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.
Patrick T McGrathSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.
Jeffrey T StreelmanSchool of Biological Sciences and Petit Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA.

Funding

Patterning the Vertebrate Dentition Through Replacement and RepairR01DE019637 · NIDCR · GEORGIA INSTITUTE OF TECHNOLOGY · PI STREELMAN, JEFFERY TODD · 2010 to 2022
$4.5M
Identification and study of adaptive mutations and phenotypes using laboratory growth of C. elegansR35GM139594 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MCGRATH, PATRICK T · 2021 to 2025
$2.0M
Castles made of sand: The genomics of complex behaviorR01GM101095 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI FRASER, HUNTER B, STREELMAN, JEFFERY TODD · 2014 to 2017
$1.2M
Neural substrates of bower building behavior in Lake Malawi cichlid fishF32GM128346 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI JOHNSON, ZACHARY V · 2019 to 2020
$73k
NIDCR NIH HHS R01 DE019637NIGMS NIH HHS F32 GM128346NIGMS NIH HHS R01 GM101095NIGMS NIH HHS R35 GM139594NIH HHS F32GM128346-01A1NIH HHS R01GM101095
6 · The paper itself

Abstract

Lake Malawi cichlid fishes exhibit extensive divergence in form and function built from a relatively small number of genetic changes. We compared the genomes of rock- and sand-dwelling species and asked which genetic variants differed among the groups. We found that 96% of differentiated variants reside in non-coding sequence but these non-coding diverged variants are evolutionarily conserved. Genome regions near differentiated variants are enriched for craniofacial, neural and behavioral categories. Following leads from genome sequence, we used rock- vs. sand-species and their hybrids to (i) delineate the push-pull roles of BMP signaling and irx1b in the specification of forebrain territories during gastrulation and (ii) reveal striking context-dependent brain gene expression during adult social behavior. Our results demonstrate how divergent genome sequences can predict differences in key evolutionary traits. We highlight the promise of evolutionary reverse genetics-the inference of phenotypic divergence from unbiased genome sequencing and then empirical validation in natural populations.

Indexed as

Behavior, AnimalBiological EvolutionGenomeGenomicsAnimalsBrainCichlidsPhylogenyTranscriptome

Identifiers

PMID34155279
PMCPMC8217251

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.