Evidence map›Paper›PMID 34155239›Full record

ArticleScientific reports2021

A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation.

Jordan K Villa, Runhua Han, Chen-Hsun Tsai, Angela Chen, Philip Sweet, Gabriela Franco, Respina Vaezian, Rok Tkavc, Michael J Daly, Lydia M Contreras

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Review
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  7. Article
  8. Quantitative morphological analysis ofApplied and environmental microbiology · 2024
    Article
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  12. Article
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  14. CsrA Shows Selective Regulation of sRNA-mRNA Networks.bioRxiv : the preprint server for biology · 2023
    Article
  15. CsrA selectively modulates sRNA-mRNA regulator outcomes.Frontiers in molecular biosciences · 2023
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jordan K VillaInstitute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA.
Runhua HanMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX, USA.
Chen-Hsun TsaiMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX, USA.
Angela ChenMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX, USA.
Philip SweetInstitute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA.
Gabriela FrancoMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX, USA.
Respina VaezianMcKetta Department of Chemical Engineering, University of Texas at Austin, Austin, TX, USA.
Rok TkavcDepartment of Pathology, School of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Michael J DalyDepartment of Pathology, School of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Lydia M ContrerasInstitute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA. lcontrer@che.utexas.edu.
The University of Texas at Austin · USUniformed Services University of the Health Sciences · US

Funding

RNA-mediated regulation of antioxidant accumulation during recovery from radiation stressR21ES025923 · NIEHS · UNIVERSITY OF TEXAS AT AUSTIN · PI CONTRERAS, LYDIA MARIA · 2017 to 2018
$417k
NIEHS NIH HHS R21 ES025923NIH HHS 5R21ES025923-02
6 · The paper itself

Abstract

Networks of transcriptional and post-transcriptional regulators are critical for bacterial survival and adaptation to environmental stressors. While transcriptional regulators provide rapid activation and/or repression of a wide-network of genes, post-transcriptional regulators, such as small RNAs (sRNAs), are also important to fine-tune gene expression. However, the mechanisms of sRNAs remain poorly understood, especially in less-studied bacteria. Deinococcus radiodurans is a gram-positive bacterium resistant to extreme levels of ionizing radiation (IR). Although multiple unique regulatory systems (e.g., the Radiation and Desiccation Response (RDR)) have been identified in this organism, the role of post-transcriptional regulators has not been characterized within the IR response. In this study, we have characterized an sRNA, PprS (formerly Dsr2), as a post-transcriptional coordinator of IR recovery in D. radiodurans. PprS showed differential expression specifically under IR and knockdown of PprS resulted in reduced survival and growth under IR, suggesting its importance in regulating post-radiation recovery. We determined a number of potential RNA targets involved in several pathways including translation and DNA repair. Specifically, we confirmed that PprS binds within the coding region to stabilize the pprM (DR_0907) transcript, a RDR modulator. Overall, these results are the first to present an additional layer of sRNA-based control in DNA repair pathways associated with bacterial radioresistance.

Indexed as

Gene Expression Regulation, BacterialRadiation, IonizingRNA, BacterialBacterial ProteinsDeinococcusDNA RepairModels, BiologicalOpen Reading FramesBacterial ProteinsRNA, Bacterial

Identifiers

PMID34155239
PMCPMC8217566
OpenAlexW3173796565

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.