Evidence map›Paper›PMID 34155000›Full record

ArticleCancer discovery2021

Multiomic Analysis of Lung Tumors Defines Pathways Activated in Neuroendocrine Transformation.

Alvaro Quintanal-Villalonga, Hirokazu Taniguchi, Yingqian A Zhan, Maysun M Hasan, Shweta S Chavan, Fanli Meng, Fathema Uddin, Parvathy Manoj, Mark T A Donoghue, Helen H Won and 26 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed, 2 pooled it
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 2 syntheses or guidelines pooled it, 170 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Genes, fuel, and fate in lung cancer.Biochemical Society transactions · 2026
    Review
  4. Article
  5. Article
  6. JTO clinical and research reports · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review

61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors at 2 institutions in 1 country.

Alvaro Quintanal-VillalongaDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Hirokazu TaniguchiDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Yingqian A ZhanCenter for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-3548-9227
Maysun M HasanSloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-6496-4752
Shweta S ChavanMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, New York.
Fanli MengSloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York.
Fathema UddinDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Parvathy ManojDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Mark T A DonoghueMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, New York.
Helen H WonMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, New York.
Joseph M ChanDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Metamia CiampricottiDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0001-5382-0481
Andrew ChowDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Michael OffinDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-7959-3018
Jason C ChangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Jordana Ray-KirtonPrecision Pathology Center, Memorial Sloan Kettering Cancer Center, New York, New York.
Sam E TischfieldSloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-5717-3856
Jacklynn EggerDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-2180-4169
Umesh K BhanotPrecision Pathology Center, Memorial Sloan Kettering Cancer Center, New York, New York.
Irina LinkovPrecision Pathology Center, Memorial Sloan Kettering Cancer Center, New York, New York.
Marina AsherPrecision Pathology Center, Memorial Sloan Kettering Cancer Center, New York, New York.
Sonali SinhaPrecision Pathology Center, Memorial Sloan Kettering Cancer Center, New York, New York.
Joachim SilberDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Christine A Iacobuzio-DonahueDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-4672-3023
Michael H RoehrlDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Travis J HollmannDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Helena A YuDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Juan QiuAntitumor Assessment Core, Memorial Sloan Kettering Cancer Center, New York, New York.
Elisa de StanchinaAntitumor Assessment Core, Memorial Sloan Kettering Cancer Center, New York, New York.
Marina K BaineDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Natasha RekhtmanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0001-5801-3144
John T PoirierPerlmutter Cancer Center, New York University Langone Health, New York, New York.ORCID 0000-0001-9795-5644
Brian LoomisMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-1863-1199
Richard P KocheCenter for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York.
Charles M RudinDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Triparna SenDepartment of Medicine, Thoracic Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.
Memorial Sloan Kettering Cancer Center · USNYU Langone Health · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Coordinating center for the NCI small cell lung cancer research consortiumU24CA213274 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Lauren Averett Byers, JOHN D. MINNA · 2017 to 2026
$12.9M
Determinants of acquired resistance in small cell lung cancerR01CA197936 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI RUDIN, CHARLES M. · 2016 to 2020
$3.1M
Drivers of histologic transformation in EGFR-mutant lung cancerR01CA264078 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI RUDIN, CHARLES M., YU, HELENA · 2021 to 2025
$2.0M
Assessment of Tim-4+ Pleural Macrophages as Negative Regulators of Anti-Tumor T Cell Immunity in Lung CancerK08CA248723 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CHOW, ANDREW · 2020 to 2022
$602k
NCI NIH HHS K08 CA248723NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA197936NCI NIH HHS R01 CA264078NCI NIH HHS U24 CA213274
6 · The paper itself

Abstract

Lineage plasticity is implicated in treatment resistance in multiple cancers. In lung adenocarcinomas (LUAD) amenable to targeted therapy, transformation to small cell lung cancer (SCLC) is a recognized resistance mechanism. Defining molecular mechanisms of neuroendocrine (NE) transformation in lung cancer has been limited by a paucity of pre/posttransformation clinical samples. Detailed genomic, epigenomic, transcriptomic, and protein characterization of combined LUAD/SCLC tumors, as well as pre/posttransformation samples, supports that NE transformation is primarily driven by transcriptional reprogramming rather than mutational events. We identify genomic contexts in which NE transformation is favored, including frequent loss of the 3p chromosome arm. We observed enhanced expression of genes involved in the PRC2 complex and PI3K/AKT and NOTCH pathways. Pharmacologic inhibition of the PI3K/AKT pathway delayed tumor growth and NE transformation in an EGFR-mutant patient-derived xenograft model. Our findings define a novel landscape of potential drivers and therapeutic vulnerabilities of NE transformation in lung cancer. SIGNIFICANCE: The difficulty in collection of transformation samples has precluded the performance of molecular analyses, and thus little is known about the lineage plasticity mechanisms leading to LUAD-to-SCLC transformation. Here, we describe biological pathways dysregulated upon transformation and identify potential predictors and potential therapeutic vulnerabilities of NE transformation in the lung. See related commentary by Meador and Lovly, p. 2962. This article is highlighted in the In This Issue feature, p. 2945.

Indexed as

Adenocarcinoma of LungLung NeoplasmsNeuroendocrine TumorsSmall Cell Lung CarcinomaHumansMutationPhosphatidylinositol 3-Kinases

Identifiers

PMID34155000
PMCPMC9437746
OpenAlexW3173930299

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.