Evidence map›Paper›PMID 34152199›Full record

ArticleJournal of bacteriology2021

Rhodobacter sphaeroides CarD Negatively Regulates Its Own Promoter.

Kemardo K Henry, Wilma Ross, Richard L Gourse

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Tools for genetic engineering and gene expression control inApplied and environmental microbiology · 2024
    Article
  4. Article
  5. Tools for Genetic Engineering and Gene Expression Control inbioRxiv : the preprint server for biology · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kemardo K HenryDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Wilma RossDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Richard L GourseDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.
University of Wisconsin–Madison · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
Mechanism, Activation, and Control of rRNA TranscriptionR37GM037048 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOURSE, RICHARD L. · 2007 to 2016
$6.6M
MEDCHANISM, ACTIVATION, &CONTROL OF RRNA TRANSCRIPTIONR01GM037048 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOURSE, RICHARD L. · 1986 to 2020
$5.9M
NIGMS NIH HHS GM37048NIGMS NIH HHS R01 GM037048NIGMS NIH HHS R37 GM037048NIGMS NIH HHS T32 GM007215NIGMS NIH HHS T32GM007215
6 · The paper itself

Abstract

Bioinformatic analysis showed previously that a majority of promoters in the photoheterotrophic alphaproteobacterium Rhodobacter sphaeroides lack the thymine at the last position of the -10 element (-7T), a base that is very highly conserved in promoters in bacteria other than alphaproteobacteria. The absence of -7T was correlated with low promoter activity using purified R. sphaeroides RNA polymerase (RNAP), but the transcription factor CarD compensated by activating almost all promoters lacking -7T tested

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticBacterial ProteinsBase SequenceRhodobacter sphaeroidesTranscription FactorsTranscription, GeneticBacterial ProteinsTranscription FactorsCarDnegative autoregulationpromoter escapeR. sphaeroides promoterstranscription factortranscription inhibition

Identifiers

PMID34152199
PMCPMC8351637
OpenAlexW3176739454

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.