Evidence map›Paper›PMID 34152039›Full record

ArticleThe Plant journal : for cell and molecular biology2021

Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance.

Marek Glombik, Dario Copetti, Jan Bartos, Stepan Stoces, Zbigniew Zwierzykowski, Tom Ruttink, Jonathan F Wendel, Martin Duchoslav, Jaroslav Dolezel, Bruno Studer and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

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  10. Plants (Basel, Switzerland) · 2023
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  11. Article
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  13. Uniparental expression of ribosomal RNA in ×Frontiers in plant science · 2023
    Article
  14. Genome Dominance inFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 5 countries.

Marek GlombikCentre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 77900, Olomouc, Czech Republic.ORCID 0000-0003-0864-7178
Dario CopettiMolecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.ORCID 0000-0002-2680-2568
Jan BartosCentre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 77900, Olomouc, Czech Republic.ORCID 0000-0002-4154-8895
Stepan StocesCentre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 77900, Olomouc, Czech Republic.
Zbigniew ZwierzykowskiDepartment of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, 60-479, Poznań, Poland.
Tom RuttinkPlant Sciences Unit, Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Caritasstraat 39, 9090, Melle, Belgium.ORCID 0000-0002-1012-9399
Jonathan F WendelDepartment of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.ORCID 0000-0003-2258-5081
Martin DuchoslavDepartment of Botany, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, 78371, Olomouc, Czech Republic.ORCID 0000-0002-8553-8226
Jaroslav DolezelCentre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 77900, Olomouc, Czech Republic.ORCID 0000-0002-6263-0492
Bruno StuderMolecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.ORCID 0000-0001-8795-0719
David KopeckyCentre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 77900, Olomouc, Czech Republic.ORCID 0000-0002-2834-1734
Czech Academy of Sciences, Institute of Experimental Botany · CZETH Zurich · CHInstitute of Plant Genetics, Polish Academy of Sciences · PLIowa State University · USMasaryk University · CZPalacký University Olomouc · CZUniversity of Zurich · CHVlaams Instituut voor Biotechnologie · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Allopolyploidization entailing the merger of two distinct genomes in a single hybrid organism, is an important process in plant evolution and a valuable tool in breeding programs. Newly established hybrids often experience massive genomic perturbations, including karyotype reshuffling and gene expression modifications. These phenomena may be asymmetric with respect to the two progenitors, with one of the parental genomes being "dominant." Such "genome dominance" can manifest in several ways, including biased homoeolog gene expression and expression level dominance. Here we employed a k-mer-based approach to study gene expression in reciprocal Festuca pratensis Huds. × Lolium multiflorum Lam. allopolyploid grasses. Our study revealed significantly more genes where expression mimicked that of the Lolium parent compared with the Festuca parent. This genome dominance was heritable to successive generation and its direction was only slightly modified by environmental conditions and plant age. Our results suggest that Lolium genome dominance was at least partially caused by its more efficient trans-acting gene expression regulatory factors. Unraveling the mechanisms responsible for propagation of parent-specific traits in hybrid crops contributes to our understanding of allopolyploid genome evolution and opens a way to targeted breeding strategies.

Indexed as

Gene Expression Regulation, PlantGenome, PlantPolyploidyCrops, AgriculturalDatabases, GeneticFestucaGene Expression ProfilingLoliumRegulatory Sequences, Nucleic AcidSequence Analysis, RNAallopolyploidycis/trans regulationGene expressiongenome dominancehomoeologinterspecific hybrids

Identifiers

PMID34152039
PMCPMC8518873
OpenAlexW3174541772

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.