Evidence map›Paper›PMID 34149387›Full record

ArticleFrontiers in neuroinformatics2021

On the Use of a Multimodal Optimizer for Fitting Neuron Models. Application to the Cerebellar Granule Cell.

Milagros Marín, Nicolás C Cruz, Eva M Ortigosa, María J Sáez-Lara, Jesús A Garrido, Richard R Carrillo

Abstract read
In one paragraph

Article in Frontiers in neuroinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Milagros MarínDepartment of Biochemistry and Molecular Biology I, University of Granada, Granada, Spain.
Nicolás C CruzDepartment of Informatics, University of Almería, ceiA3, Almería, Spain.
Eva M OrtigosaDepartment of Computer Architecture and Technology-CITIC, University of Granada, Granada, Spain.
María J Sáez-LaraDepartment of Biochemistry and Molecular Biology I, University of Granada, Granada, Spain.
Jesús A GarridoDepartment of Computer Architecture and Technology-CITIC, University of Granada, Granada, Spain.
Richard R CarrilloDepartment of Computer Architecture and Technology-CITIC, University of Granada, Granada, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This article extends a recent methodological workflow for creating realistic and computationally efficient neuron models whilst capturing essential aspects of single-neuron dynamics. We overcome the intrinsic limitations of the extant optimization methods by proposing an alternative optimization component based on multimodal algorithms. This approach can natively explore a diverse population of neuron model configurations. In contrast to methods that focus on a single global optimum, the multimodal method allows directly obtaining a set of promising solutions for a single but complex multi-feature objective function. The final sparse population of candidate solutions has to be analyzed and evaluated according to the biological plausibility and their objective to the target features by the expert. In order to illustrate the value of this approach, we base our proposal on the optimization of cerebellar granule cell (GrC) models that replicate the essential properties of the biological cell. Our results show the emerging variability of plausible sets of values that this type of neuron can adopt underlying complex spiking characteristics. Also, the set of selected cerebellar GrC models captured spiking dynamics closer to the reference model than the single model obtained with off-the-shelf parameter optimization algorithms used in our previous article. The method hereby proposed represents a valuable strategy for adjusting a varied population of realistic and simplified neuron models. It can be applied to other kinds of neuron models and biological contexts.

Indexed as

adaptive exponential integrate-and-firecerebellumgranule cellmultimodal evolutionary algorithmneuron modeloptimization

Identifiers

PMID34149387
PMCPMC8209370

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.