Evidence map›Paper›PMID 34148986›Full record

ArticleAIDS (London, England)2021

HIV-1 viral blips are associated with repeated and increasingly high levels of cell-associated HIV-1 RNA transcriptional activity.

Kazuo Suzuki, Angelique Levert, Julie Yeung, Mitchell Starr, Jane Cameron, Raffaella Williams, Nikolas Rismanto, Tayla Stark, Dylan Druery, Salzeena Prasad and 12 more

Open access · hybridAbstract read
In one paragraph

Article in AIDS (London, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. New Data and Next Steps for Clarifying How the Timing of Antiretroviral Therapy Initiation Influences Viral Blips and HIV Reservoir Size.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 3 countries.

Kazuo SuzukiSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Angelique LevertSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Julie YeungSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Mitchell StarrSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Jane CameronSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Raffaella WilliamsSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Nikolas RismantoSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Tayla StarkSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Dylan DruerySt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Salzeena PrasadSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Cristina FerrariniSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Imelda HanafiSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Leon Patrick McNallySt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Philip CunninghamSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
Zhixin LiuStats Central, University of New South Wales, Sydney, NSW, Australia.
Takaomi IshidaDenka Co. Ltd, Tokyo, Japan.
Chin-Shiou HuangPlexBio Co., Ltd. Taipei City, Taiwan.
Velma OswaldClinical Immunology and HIV Medicine, Liverpool Hospital.
Louise EvansClinical Immunology and HIV Medicine, Liverpool Hospital.
Geoffrey SymondsCSL Biotechnology.
Bruce James BrewDepartments of Neurology and Immunology.
John ZaundersSt Vincent's Centre for Applied Medical Research, NSW State Reference laboratory for HIV.
UNSW Sydney · AUDenka (Japan) · JPGTx (United States) · USLiverpool Hospital · AUUniversity of Notre Dame · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveSome HIV+ patients, virally suppressed on ART, show occasional 'blips' of detectable HIV-1 plasma RNA. We used a new highly sensitive assay of cell-associated HIV-1 RNA to measure transcriptional activity in PBMCs and production of infectious virus from the viral reservoir, in patients with and without 'blips'. DESIGN/

methodsRNA and DNA extracted from cells in 6 ml of peripheral blood, from suppressed patients with one to two 'blip' episodes over the past 2 years of ART (n = 55), or no 'blips' (n = 52), were assayed for HIV-1 RNA transcripts and proviral DNA targeting the highly conserved 'R' region of the LTR. Follow-up samples were also collected. Purified CD4+ T cells were cultured with anti-CD3/CD28/CD2 T-cell activator to amplify transcription and measure replication competent virus.

resultsHIV-1 RNA transcripts ranged from 1.3 to 5415 copies/106 white blood cells. 'Blip' patients had significantly higher levels vs. without blips (median 192 vs. 49; P = 0.0007), which correlated with: higher levels of inducible transcripts after activation in vitro, sustained higher HIV-1 transcription levels in follow-up samples along with increasing HIV-1 DNA in some, and production of replication-competent HIV-1.

conclusionViral 'blips' are significant reflecting higher transcriptional activity from the reservoir and contribute to the reservoir over time. This sensitive assay can be used in monitoring the size and activity of the HIV-1 reservoir and will be useful in HIV-1 cure strategies.

Indexed as

HIV-1HIV InfectionsHumansProvirusesRNARNA, ViralViral LoadRNARNA, Viral

Identifiers

PMID34148986
PMCPMC8505147
OpenAlexW3175555307

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.