Evidence map›Paper›PMID 34148267›Full record

ArticleMolecular reproduction and development2021

Proteomics support the threespine stickleback egg coat as a protective oocyte envelope.

Emily E Killingbeck, Damien B Wilburn, Gennifer E Merrihew, Michael J MacCoss, Willie J Swanson

Open access · greenAbstract read
In one paragraph

Article in Molecular reproduction and development, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Emily E KillingbeckDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Damien B WilburnDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Gennifer E MerrihewDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Willie J SwansonDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
University of Washington · US

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Detailed functional analysis of gamete recognition protein interactionsR01HD076862 · NICHD · UNIVERSITY OF WASHINGTON · PI SWANSON, WILLIE J · 2014 to 2018
$1.9M
Integrating 'omics', evolution, and structural biochemistry to understand animal fertilizationK99HD090201 · NICHD · UNIVERSITY OF WASHINGTON · PI WILBURN, DAMIEN BEAU · 2018 to 2020
$294k
Genomic and biochemical investigations of rapidly evolving fertilization proteins in a vertebrate modelF31HD093441 · NICHD · UNIVERSITY OF WASHINGTON · PI SCHNEIDEREIT, EMILY ERSKINE KILLINGBECK · 2017 to 2018
$77k
NHGRI NIH HHS T32 HG000035NICHD NIH HHS F31 HD093441NICHD NIH HHS K99 HD090201NICHD NIH HHS R01 HD076862
6 · The paper itself

Abstract

Ancestrally marine threespine stickleback fish (Gasterosteus aculeatus) have undergone an adaptive radiation into freshwater environments throughout the Northern Hemisphere, creating an excellent model system for studying molecular adaptation and speciation. Ecological and behavioral factors have been suggested to underlie stickleback reproductive isolation and incipient speciation, but reproductive proteins mediating gamete recognition during fertilization have so far remained unexplored. To begin to investigate the contribution of reproductive proteins to stickleback reproductive isolation, we have characterized the stickleback egg coat proteome. We find that stickleback egg coats are comprised of homologs to the zona pellucida (ZP) proteins ZP1 and ZP3, as in other teleost fish. Our molecular evolutionary analyses indicate that across teleosts, ZP3 but not ZP1 has experienced positive Darwinian selection. Mammalian ZP3 is also rapidly evolving, and surprisingly some residues under selection in stickleback and mammalian ZP3 directly align. Despite broad homology, however, we find differences between mammalian and stickleback ZP proteins with respect to glycosylation, disulfide bonding, and sites of synthesis. Taken together, the changes we observe in stickleback ZP protein architecture suggest that the egg coats of stickleback fish, and perhaps fish more generally, have evolved to fulfill a more protective functional role than their mammalian counterparts.

Indexed as

AnimalsCytoprotectionEgg ProteinsFemaleOocytesProteomeProteomicsSmegmamorphaZona PellucidaZona Pellucida GlycoproteinsEgg ProteinsProteomeZona Pellucida Glycoproteinsegg coatfertilizationreproductionsticklebackzona pellucida

Identifiers

PMID34148267
PMCPMC8362008
OpenAlexW3175046791

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.