Evidence map›Paper›PMID 34147471›Full record

ArticleDevelopmental biology2021

Light-induced, spatiotemporal control of protein in the developing embryo of the sea urchin.

Florence D M Wavreil, Jessica Poon, Gary M Wessel, Mamiko Yajima

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Florence D M WavreilDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, 185 Meeting Street, BOX-GL277, Providence, RI, 02912, USA.
Jessica PoonDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, 185 Meeting Street, BOX-GL277, Providence, RI, 02912, USA.
Gary M WesselDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, 185 Meeting Street, BOX-GL277, Providence, RI, 02912, USA.
Mamiko YajimaDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, 185 Meeting Street, BOX-GL277, Providence, RI, 02912, USA. Electronic address: mamiko_yajima@brown.edu.
Brown University · US

Funding

Mechanisms that drive germline successR35GM140897 · NIGMS · BROWN UNIVERSITY · PI GARY M WESSEL · 2021 to 2026
$3.8M
Localized mRNA translation on the spindle -an essential mechanism for embryonic cell regulationR01GM126043 · NIGMS · BROWN UNIVERSITY · PI YAJIMA, MAMIKO · 2018 to 2022
$2.0M
Mechanisms of quiescence in primordial germ cellsR01GM125071 · NIGMS · BROWN UNIVERSITY · PI WESSEL, GARY M · 2017 to 2020
$1.4M
Sequential restriction of germ line progenitors by inductionR01GM132222 · NIGMS · BROWN UNIVERSITY · PI WESSEL, GARY M · 2019 to 2020
$694k
NIGMS NIH HHS R01 GM125071NIGMS NIH HHS R01 GM126043NIGMS NIH HHS R01 GM132222NIGMS NIH HHS R35 GM140897
6 · The paper itself

Abstract

Differential protein regulation is a critical biological process that regulates cellular activity and controls cell fate determination. It is especially important during early embryogenesis when post-transcriptional events predominate differential fate specification in many organisms. Light-induced approaches have been a powerful technology to interrogate protein functions with temporal and spatial precision, even at subcellular levels within a cell by controlling laser irradiation on the confocal microscope. However, application and efficacy of these tools need to be tested for each model system or for the cell type of interest because of the complex nature of each system. Here, we introduce two types of light-induced approaches to track and control proteins at a subcellular level in the developing embryo of the sea urchin. We found that the photoconvertible fluorescent protein Kaede is highly efficient to distinguish pre-existing and newly synthesized proteins with no apparent phototoxicity, even when interrogating proteins associated with the mitotic spindle. Further, chromophore-assisted light inactivation (CALI) using miniSOG successfully inactivated target proteins of interest in the vegetal cortex and selectively delayed or inhibited asymmetric cell division. Overall, these light-induced manipulations serve as important molecular tools to identify protein function for for subcellular interrogations in developing embryos.

Indexed as

Cell DivisionAnimalsAsymmetric Cell DivisionChromophore-Assisted Light InactivationDEAD-box RNA HelicasesEmbryonic DevelopmentEmbryo, NonmammalianLightLuminescent ProteinsProteinsRecombinant Fusion ProteinsSea UrchinsSpatio-Temporal AnalysisSpindle ApparatusZebrafish Proteinsddx4 protein, zebrafishDEAD-box RNA HelicasesDendra2 protein, DendronephthyaKaede protein, Trachyphyllia geoffroyiLuminescent ProteinsProteinsRecombinant Fusion ProteinsZebrafish ProteinsCALIEmbryonic developmentKaedePhotoconvertible proteinSea urchin embryo

Identifiers

PMID34147471
PMCPMC8364515
OpenAlexW3173822635

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.