ArticleBMC plant biology2021
Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in rice.
Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed, 48 citations in OpenAlex.
- BSA-seq and fine linkage mapping for the identification of a novel locus (qNUE6) for nitrogen use efficiency in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- OsERF5 enhances cold tolerance and is associated with GA‑mediated antioxidant defence in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Discovery of cold tolerance genes and favorable alleles in Kam sweet rice across various growth stages.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genetic Analysis of the Awn Length Gene in the Rice Chromosome Segment Substitution Line CSSL29.International journal of molecular sciences · 2025Article
- Linkage Mapping and Identification of Candidate Genes for Cold Tolerance in Rice (Oryza Sativa L.) at the Bud Bursting Stage.Rice (New York, N.Y.) · 2025Article
- Integrated transcriptome and co-expression network analysis revealed the molecular mechanism of cold tolerance in japonica rice at booting stage.Frontiers in plant science · 2025Article
- MAPtools: command-line tools for mapping-by-sequencing and QTL-Seq analysis and visualization.Plant methods · 2024Article
- Identification of candidate genes controlling cold tolerance at the early seedling stage from Dongxiang wild rice by QTL mapping, BSA-Seq and RNA-Seq.BMC plant biology · 2024Article
- The Molecular Mechanism of Cold-Stress Tolerance: Cold Responsive Genes and Their Mechanisms in Rice (Biology · 2024Review
- BSA-Seq for the Identification of Major Genes for EPN in Rice.International journal of molecular sciences · 2023Article
- Article
- Cloning of an Albino Mutation ofInternational journal of molecular sciences · 2023Article
- Identification of QTLs and allelic effect controlling lignan content in sesame (Frontiers in genetics · 2023Article
- Versatile mapping-by-sequencing with Easymap v.2.Frontiers in plant science · 2023Article
- Article
- Identification of QTL under Brassinosteroid-Combined Cold Treatment at Seedling Stage in Rice Using Genotyping-by-Sequencing (GBS).Plants (Basel, Switzerland) · 2022Article
- OsWRKY115 on qCT7 links to cold tolerance in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).Rice (New York, N.Y.) · 2022Article
- Favorable QTLs from Oryza longistaminata improve rice drought resistance.BMC plant biology · 2022Article
- Mapping of a QTL associated with sucrose content in peanut kernels using BSA-seq.Frontiers in genetics · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundCold stress caused by low temperatures is an important factor restricting rice production. Identification of cold-tolerance genes that can stably express in cold environments is crucial for molecular rice breeding.
resultsIn this study, we employed high-throughput quantitative trait locus sequencing (QTL-seq) analyses in a 460-individual F
conclusionWe identified OsbZIP54 as a novel regulatory gene associated with rice cold-responsive traits, with its Dongfu-104 allele showing specific cold-induction expression serving as an important molecular variation for rice improvement. This result is expected to further exploration of the genetic mechanism of rice cold tolerance at the seedling stage and improve cold tolerance in rice varieties by marker-assisted selection.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.