Evidence map›Paper›PMID 34145524›Full record

ArticleJournal of applied genetics2021

Effect of genomic X-chromosome regions on Nelore bull fertility.

Isis da Costa Hermisdorff, Iara Del Pilar Solar Diaz, Gregório Miguel Ferreira de Camargo, Lucia Galvão de Albuquerque, Raphael Bermal Costa

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In one paragraph

Article in Journal of applied genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Isis da Costa HermisdorffEscola de Medicina Veterinária E Zootecnia, Universidade Federal da Bahia (UFBA), Salvador, BA, Brazil.ORCID https://orcid.org/0000-0003-3777-5208
Iara Del Pilar Solar DiazEscola de Medicina Veterinária E Zootecnia, Universidade Federal da Bahia (UFBA), Salvador, BA, Brazil.ORCID https://orcid.org/0000-0002-7285-0384
Gregório Miguel Ferreira de CamargoEscola de Medicina Veterinária E Zootecnia, Universidade Federal da Bahia (UFBA), Salvador, BA, Brazil.ORCID https://orcid.org/0000-0002-8736-5576
Lucia Galvão de AlbuquerqueDepartamento de Zootecnia, Faculdade de Ciências Agrárias E Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, SP, Brazil.ORCID https://orcid.org/0000-0002-2030-7590
Raphael Bermal CostaEscola de Medicina Veterinária E Zootecnia, Universidade Federal da Bahia (UFBA), Salvador, BA, Brazil. raphael.bermal@ufba.br.ORCID https://orcid.org/0000-0002-6463-7436
Universidade Federal da Bahia · BRUniversidade Estadual Paulista (Unesp) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scrotal circumference (SC) is a commonly used trait related to sexual precocity in bulls. Genome-wide association studies have uncovered a lot of genes related to this trait, however, only those present on autosomes. The inclusion of the second biggest chromosome (BTAX) can improve the knowledge of the genetic architecture of this trait. In this study, we performed a weighted, single-step, genome-wide association study using a 777 k BovineHD BeadChip (IllumHD) to analyze the association between SNPs and SC in Brazilian Nelore cattle. Phenotypes from 79,300 males and 3263 genotypes (2017 from females and 1246 from males)-(39,367 SNPs markers located at ChrX) were used. We identified eight regions on chromosome X that displayed important associations with SC. The results showed that together the genomic windows explained 28.52% of the genetic variance for the examined trait. Genes with potential functions in reproduction and fertility regulation were highlighted as candidates for sexual precocity rates in Nelore cattle (AFF2 and PJA1). Moreover, we found 10 genes that had not previously been identified as being associated with sexual precocity traits in cattle. These findings will further advance our understanding of the genetic architecture, considering mainly the presence of the chromosome X, for indicine cattle reproductive traits, being useful in the context of genomic prediction in beef cattle.

Indexed as

Genome-Wide Association StudyQuantitative Trait LociAnimalsCattleFemaleFertilityGenomicsGenotypeMalePhenotypePolymorphism, Single NucleotideX ChromosomeBos taurus indicusNelore cattleScrotal circumferenceSexual chromosomesSexual precocity

Identifiers

PMID34145524
OpenAlexW3172613177

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.