Evidence map›Paper›PMID 34145348›Full record

ArticleScientific reports2021

Human intelectin-1 (ITLN1) genetic variation and intestinal expression.

Eric B Nonnecke, Patricia A Castillo, Amanda E Dugan, Faisal Almalki, Mark A Underwood, Carol A De La Motte, Weirong Yuan, Wuyuan Lu, Bo Shen, Malin E V Johansson and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Soluble Human Lectins at the Host-Microbe Interface.Annual review of biochemistry · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The role of goblet cells and mucus in intestinal homeostasis.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  18. Human intelectin-2 (ITLN2) is selectively expressed by secretory Paneth cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  19. Characterization of an intelectin-1 (Frontiers in immunology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 5 countries.

Eric B NonneckeDepartment of Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, CA, 95616, USA. ebnonnecke@ucdavis.edu.
Patricia A CastilloDepartment of Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, CA, 95616, USA.
Amanda E DuganDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Faisal AlmalkiDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Mark A UnderwoodDepartment of Pediatrics, School of Medicine, University of California, Davis, Sacramento, CA, 95817, USA.
Carol A De La MotteDepartment of Inflammation and Immunity, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, 44195, USA.
Weirong YuanInstitute of Human Virology, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Wuyuan LuInstitute of Human Virology, Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Bo ShenDepartment of Gastroenterology, Hepatology and Nutrition, Digestive Diseases and Surgery Institute, Cleveland Clinic, Cleveland, OH, 44195, USA.
Malin E V JohanssonInstitute of Biomedicine, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden.
Laura L KiesslingDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Edward J HolloxDepartment of Genetics and Genome Biology, University of Leicester, Leicester, UK.
Bo LönnerdalDepartment of Nutrition, University of California, Davis, Davis, CA, 95616, USA.
Charles L BevinsDepartment of Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, CA, 95616, USA. clbevins@ucdavis.edu.
University of California, Davis · USCleveland Clinic · USBroad Institute · USFudan University · CNMassachusetts Institute of Technology · USTaibah University · SAUniversity of Gothenburg · SEUniversity of Leicester · GBUniversity of Maryland, Baltimore · US

Funding

Synthetic Ligands for Modulating Immune Cell ResponsesR01AI055258 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KIESSLING, LAURA L · 2003 to 2024
$7.8M
Novel Defensins in Human Epithelial TissuesR37AI032738 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEVINS, CHARLES L · 2015 to 2022
$3.1M
Paneth Cell Secreted Effectors in Mucosal Innate ImmunityU01AI125956 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEVINS, CHARLES L · 2016 to 2020
$2.3M
Development of multifunctional probes for profiling microbial glycansU01CA231079 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI IMPERIALI, BARBARA, KIESSLING, LAURA L · 2018 to 2020
$1.4M
NCI NIH HHS U01 CA231079NIAID NIH HHS R01 AI055258NIAID NIH HHS R37 AI032738NIAID NIH HHS U01 AI125956NIH HHS R37AI32738NIH HHS U01AI125926NIH HHS U01CA231079
6 · The paper itself

Abstract

Intelectins are ancient carbohydrate binding proteins, spanning chordate evolution and implicated in multiple human diseases. Previous GWAS have linked SNPs in ITLN1 (also known as omentin) with susceptibility to Crohn's disease (CD); however, analysis of possible functional significance of SNPs at this locus is lacking. Using the Ensembl database, pairwise linkage disequilibrium (LD) analyses indicated that several disease-associated SNPs at the ITLN1 locus, including SNPs in CD244 and Ly9, were in LD. The alleles comprising the risk haplotype are the major alleles in European (67%), but minor alleles in African superpopulations. Neither ITLN1 mRNA nor protein abundance in intestinal tissue, which we confirm as goblet-cell derived, was altered in the CD samples overall nor when samples were analyzed according to genotype. Moreover, the missense variant V109D does not influence ITLN1 glycan binding to the glycan β-D-galactofuranose or protein-protein oligomerization. Taken together, our data are an important step in defining the role(s) of the CD-risk haplotype by determining that risk is unlikely to be due to changes in ITLN1 carbohydrate recognition, protein oligomerization, or expression levels in intestinal mucosa. Our findings suggest that the relationship between the genomic data and disease arises from changes in CD244 or Ly9 biology, differences in ITLN1 expression in other tissues, or an alteration in ITLN1 interaction with other proteins.

Indexed as

Gene Expression RegulationGenetic VariationAllelesCrohn DiseaseCytokinesDisease SusceptibilityGastrointestinal TractGenetic LociGPI-Linked ProteinsHumansLectinsOrgan SpecificityCytokinesGPI-Linked ProteinsITLN1 protein, humanLectins

Identifiers

PMID34145348
PMCPMC8213764
OpenAlexW3169157963

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.