Evidence map›Paper›PMID 34145313›Full record

ArticleScientific reports2021

SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression.

Tara T Doucet-O'Hare, Brianna L DiSanza, Catherine DeMarino, Abigail L Atkinson, Jared S Rosenblum, Lisa J Henderson, Kory R Johnson, Jeffrey Kowalak, Marta Garcia-Montojo, Sariah J Allen and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

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  18. Retroviral Elements in Pathophysiology and as Therapeutic Targets for Amyotrophic Lateral Sclerosis.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Tara T Doucet-O'HareSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Brianna L DiSanzaSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Catherine DeMarinoSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Abigail L AtkinsonSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Jared S RosenblumNeuro-Oncology Branch, National Cancer Institute (NCI), Bethesda, USA.
Lisa J HendersonSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Kory R JohnsonBioinformatics Section, National Institute of Neurological Disorders and Stroke, Bethesda, USA.
Jeffrey KowalakClinical Proteomics Unit, National Cancer Institute (NCI), Bethesda, USA.
Marta Garcia-MontojoSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Sariah J AllenDepartment of Pathology, St. Jude's Children's Research Hospital, Memphis, USA.
Brent A OrrDepartment of Pathology, St. Jude's Children's Research Hospital, Memphis, USA.
Mariarita SantiDepartment of Pathology, Perelman School of Medicine, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA, USA.
Tongguang WangNeural Differentiation Unit, Translational Neuroscience Center, NINDS, Bethesda, NIHMD, USA.
Saeed FathiSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Myoung Hwa LeeSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Kevon SampsonSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Wenxue LiSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA.
Zhengping ZhuangNeuro-Oncology Branch, National Cancer Institute (NCI), Bethesda, USA.
Avindra NathSection of Infection of the Nervous System, Disorders and Stroke (NINDS), National Institute of Neurological, National Institutes of Health (NIH), Bldg 10; Room 7C-103; 10 Center Drive, Bethesda, MD, 20892, USA. Avindra.nath@nih.gov.
National Institute of Neurological Disorders and Stroke · USNational Institutes of Health · USNational Cancer Institute · USSt. Jude Children's Research Hospital · USPhiladelphia University · US

Funding

Hypoxia signaling in cancer developmentZIABC011773 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ZHUANG, ZHENGPING · 2017 to 2025
$13.0M
NINDS Clinical Proteomics UnitZICNS003147 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI KOWALAK, JEFFREY · 2016 to 2023
$4.9M
6 · The paper itself

Abstract

Atypical Teratoid Rhabdoid Tumor (AT/RT) is a rare pediatric central nervous system cancer often characterized by deletion or mutation of SMARCB1, a tumor suppressor gene. In this study, we found that SMARCB1 regulates Human Endogenous Retrovirus K (HERV-K, subtype HML-2) expression. HML-2 is a repetitive element scattered throughout the human genome, encoding several intact viral proteins that have been associated with stem cell maintenance and tumorigenesis. We found HML-2 env expression in both the intracellular and extracellular compartments in all AT/RT cell lines (n = 4) and in 95% of AT/RT patient tissues (n = 37) evaluated. SMARCB1 knock-down in neural stem cells (NSCs) led to an upregulation of HML-2 transcription. We found that SMARCB1 binds adjacent to the HML-2 promoter, repressing its transcription via chromatin immunoprecipitation; restoration of SMARCB1 expression in AT/RT cell lines significantly downregulated HML-2 expression. Further, targeted downregulation of HML-2 transcription via CRISPR-dCas9 coupled with suppressor proteins led to cellular dispersion, decreased proliferation, and cell death in vitro. HML-2 knock-down with shRNA, siRNA, and CRISPR-dCas9 significantly decreased Ras expression as measured by qRT-PCR, suggesting that HML-2 modulates MAPK/ERK signaling in AT/RT cells. Overexpression of NRAS was sufficient to restore cellular proliferation, and MYC, a transcription factor downstream of NRAS, was bound to the HERV-K LTR significantly more in the absence of SMARCB1 expression in AT/RT cells. We show a mechanism by which these undifferentiated tumors remain pluripotent, and we demonstrate that their formation is aided by aberrant HML-2 activation, which is dependent on SMARCB1 and its interaction with MYC.

Indexed as

Sequence DeletionBiomarkers, TumorCell-Derived MicroparticlesCell Line, TumorCell ProliferationCell Transformation, NeoplasticDisease SusceptibilityEndogenous RetrovirusesGene Expression RegulationGTP PhosphohydrolasesHumansMembrane ProteinsRepetitive Sequences, Nucleic AcidRhabdoid TumorSignal TransductionSMARCB1 ProteinBiomarkers, TumorGTP PhosphohydrolasesMembrane ProteinsNRAS protein, humanSMARCB1 ProteinSMARCB1 protein, human

Identifiers

PMID34145313
PMCPMC8213802
OpenAlexW3171423063

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.