Evidence map›Paper›PMID 34145235›Full record

ArticleNature communications2021

Coordination of two enhancers drives expression of olfactory trace amine-associated receptors.

Aimei Fei, Wanqing Wu, Longzhi Tan, Cheng Tang, Zhengrong Xu, Xiaona Huo, Hongqiang Bao, Yalei Kong, Mark Johnson, Griffin Hartmann and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Exchange dynamics and kinetic control of gene regulation complexes.Nature reviews. Molecular cell biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Aimei Fei *Center for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Wanqing Wu *Center for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Longzhi Tan *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5618-1299
Cheng Tang *Institute of Neuroscience, State Key Laboratory of Neuroscience, Key Laboratory of Primate Neurobiology, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brian-Inspired Intelligence, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Zhengrong XuCenter for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Xiaona HuoInstitute of Neuroscience, State Key Laboratory of Neuroscience, Key Laboratory of Primate Neurobiology, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brian-Inspired Intelligence, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Hongqiang BaoCenter for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Yalei KongCenter for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Mark JohnsonDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI, USA.
Griffin HartmannDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI, USA.
Mustafa TalayDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI, USA.ORCID http://orcid.org/0000-0002-9046-1366
Cheng YangCenter for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Clemens RieglerDepartment of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, USA.
Kristian J HerreraDepartment of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5370-8366
Florian EngertDepartment of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-8169-2990
X Sunney XieDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Gilad BarneaDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI, USA.ORCID http://orcid.org/0000-0001-6842-3454
Stephen D LiberlesHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA.
Hui YangInstitute of Neuroscience, State Key Laboratory of Neuroscience, Key Laboratory of Primate Neurobiology, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brian-Inspired Intelligence, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0000-0003-3590-722X
Qian LiCenter for Brain Science of Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China. liqian@shsmu.edu.cn.ORCID http://orcid.org/0000-0003-1300-3377
Shanghai Jiao Tong University · CNHarvard University · USBrown University · USChinese Academy of Sciences · CNHoward Hughes Medical Institute · US

Funding

Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Hisashi Umemori · 2021 to 2026
$9.4M
Center for Cancer Signaling NetworksP30GM103410 · NIGMS · BROWN UNIVERSITY · PI ATWOOD, WALTER J · 2012 to 2015
$4.3M
Probing Dynamics of The Human Genome by Single Cell SequencingDP1CA186693 · NCI · HARVARD UNIVERSITY · PI PURCELL, PATRICIA · 2013 to 2017
$4.2M
An olfactory subsystem that mediates innate behaviorsR01DC013561 · NIDCD · BROWN UNIVERSITY · PI BARNEA, GILAD · 2014 to 2018
$3.1M
Howard Hughes Medical InstituteNCI NIH HHS DP1 CA186693NICHD NIH HHS P50 HD105351NIDCD NIH HHS R01 DC013561NIGMS NIH HHS P30 GM103410
6 · The paper itself

Abstract

Olfactory sensory neurons (OSNs) are functionally defined by their expression of a unique odorant receptor (OR). Mechanisms underlying singular OR expression are well studied, and involve a massive cross-chromosomal enhancer interaction network. Trace amine-associated receptors (TAARs) form a distinct family of olfactory receptors, and here we find that mechanisms regulating Taar gene choice display many unique features. The epigenetic signature of Taar genes in TAAR OSNs is different from that in OR OSNs. We further identify that two TAAR enhancers conserved across placental mammals are absolutely required for expression of the entire Taar gene repertoire. Deletion of either enhancer dramatically decreases the expression probabilities of different Taar genes, while deletion of both enhancers completely eliminates the TAAR OSN populations. In addition, both of the enhancers are sufficient to drive transgene expression in the partially overlapped TAAR OSNs. We also show that the TAAR enhancers operate in cis to regulate Taar gene expression. Our findings reveal a coordinated control of Taar gene choice in OSNs by two remote enhancers, and provide an excellent model to study molecular mechanisms underlying formation of an olfactory subsystem.

Indexed as

AnimalsAnimals, Genetically ModifiedEnhancer Elements, GeneticFemaleGene Expression RegulationMaleMiceMice, Inbred C57BLOlfactory MucosaOlfactory Receptor NeuronsOptical ImagingReceptors, G-Protein-CoupledReceptors, OdorantSmellTrace Amine-Associated ReceptorsZebrafishReceptors, G-Protein-CoupledReceptors, OdorantTAAR5 protein, mouseTrace Amine-Associated Receptors

Identifiers

PMID34145235
PMCPMC8213717
OpenAlexW3165917515

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.