Evidence map›Paper›PMID 34145232›Full record

ArticleNature communications2021

Olfactory expression of trace amine-associated receptors requires cooperative cis-acting enhancers.

Ami Shah, Madison Ratkowski, Alessandro Rosa, Paul Feinstein, Thomas Bozza

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ami Shah *Department of Neurobiology, Northwestern University, Evanston, IL, USA.
Madison Ratkowski *Department of Neurobiology, Northwestern University, Evanston, IL, USA.
Alessandro RosaThe Graduate Center Programs in Biochemistry, Biology and CUNY Neuroscience Collaborative, New York, NY, USA.ORCID 0000-0001-9171-011X
Paul FeinsteinThe Graduate Center Programs in Biochemistry, Biology and CUNY Neuroscience Collaborative, New York, NY, USA.
Thomas BozzaDepartment of Neurobiology, Northwestern University, Evanston, IL, USA. bozza@northwestern.edu.ORCID 0000-0002-6574-8154
Northwestern University · USThe Graduate Center, CUNY · US

Funding

RISE Program Hunter College Option IIIR25GM060665 · NIGMS · HUNTER COLLEGE · PI ORTIZ, BENJAMIN D.,, SERRANO, PETER A · 2000 to 2022
$22.8M
Trace Amine-Associated Receptors and Olfactory Behavior in MammalsR01DC013576 · NIDCD · NORTHWESTERN UNIVERSITY · PI BOZZA, THOMAS · 2014 to 2018
$2.5M
Development of genetically-encoded reporters for olfactory cilia signalingR21GM126304 · NIGMS · HUNTER COLLEGE · PI FEINSTEIN, PAUL · 2018 to 2019
$429k
Regulation of singular expression in Trace Amine-Associated ReceptorsF32DC015962 · NIDCD · NORTHWESTERN UNIVERSITY · PI SHAH, AMI · 2016 to 2019
$179k
NIDCD NIH HHS F32 DC015962NIDCD NIH HHS R01 DC013576NIGMS NIH HHS R21 GM126304NIGMS NIH HHS R25 GM060665
6 · The paper itself

Abstract

Olfactory sensory neurons express a large family of odorant receptors (ORs) and a small family of trace amine-associated receptors (TAARs). While both families are subject to so-called singular expression (expression of one allele of one gene), the mechanisms underlying TAAR gene choice remain obscure. Here, we report the identification of two conserved sequence elements in the mouse TAAR cluster (T-elements) that are required for TAAR gene expression. We observed that cell-type-specific expression of a TAAR-derived transgene required either T-element. Moreover, deleting either element reduced or abolished expression of a subset of TAAR genes, while deleting both elements abolished olfactory expression of all TAARs in cis with the mutation. The T-elements exhibit several features of known OR enhancers but also contain highly conserved, unique sequence motifs. Our data demonstrate that TAAR gene expression requires two cooperative cis-acting enhancers and suggest that ORs and TAARs share similar mechanisms of singular expression.

Indexed as

AnimalsEnhancer Elements, GeneticGene ExpressionGene Expression RegulationMiceMice, Inbred C57BLOlfactory MucosaOlfactory Receptor NeuronsPromoter Regions, GeneticReceptors, G-Protein-CoupledReceptors, OdorantSmellTrace Amine-Associated ReceptorsTransgenesReceptors, G-Protein-CoupledReceptors, OdorantTAAR4 protein, mouseTrace Amine-Associated Receptors

Identifiers

PMID34145232
PMCPMC8213819
OpenAlexW3167042556

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.