Evidence map›Paper›PMID 34144992›Full record

ArticleScience advances2021

Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution.

Garrett A Roberts Kingman, Deven N Vyas, Felicity C Jones, Shannon D Brady, Heidi I Chen, Kerry Reid, Mark Milhaven, Thomas S Bertino, Windsor E Aguirre, David C Heins and 9 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 115 citations in OpenAlex.

  1. Pooled it
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  6. Rapid floral syndrome convergence inbioRxiv : the preprint server for biology · 2026
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  12. Reply to MacColl: Repeated evolution from standing genetic variation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 2 countries.

Garrett A Roberts KingmanDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305-5329, USA.ORCID http://orcid.org/0000-0002-1910-3005
Deven N VyasDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245, USA.ORCID http://orcid.org/0000-0001-7363-7481
Felicity C JonesFriedrich Miescher Laboratory of the Max Planck Society, Max-Planck-Ring, Tübingen, Germany.ORCID http://orcid.org/0000-0002-5027-1031
Shannon D BradyDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305-5329, USA.ORCID http://orcid.org/0000-0002-5714-6129
Heidi I ChenDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305-5329, USA.
Kerry ReidDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245, USA.ORCID http://orcid.org/0000-0001-5653-9935
Mark MilhavenDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245, USA.
Thomas S BertinoDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245, USA.
Windsor E AguirreDepartment of Biological Sciences, DePaul University, Chicago, IL 60614-3207, USA.ORCID http://orcid.org/0000-0003-3641-5120
David C HeinsDepartment of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA 70118, USA.ORCID http://orcid.org/0000-0002-6175-8777
Frank A von HippelDepartment of Community, Environment and Policy, Mel & Enid Zuckerman College of Public Health, University of Arizona, Tucson, AZ 85724, USA.ORCID http://orcid.org/0000-0002-9247-0231
Peter J ParkDepartment of Biology, Farmingdale State College, Farmingdale, NY 11735-1021, USA.ORCID http://orcid.org/0000-0002-7460-1218
Melanie KirchFriedrich Miescher Laboratory of the Max Planck Society, Max-Planck-Ring, Tübingen, Germany.ORCID http://orcid.org/0000-0001-7265-2209
Devin M AbsherHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.
Richard M MyersHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.
Federica Di PalmaBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.
Michael A BellUniversity of California Museum of Paleontology, University of California, Berkeley, Berkeley, CA 94720, USA. krishna.veeramah@stonybrook.edu sticklemack@gmail.com kingsley@stanford.edu.ORCID http://orcid.org/0000-0002-6861-5787
David M KingsleyDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305-5329, USA. krishna.veeramah@stonybrook.edu sticklemack@gmail.com kingsley@stanford.edu.ORCID http://orcid.org/0000-0002-6401-6461
Krishna R VeeramahDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245, USA. krishna.veeramah@stonybrook.edu sticklemack@gmail.com kingsley@stanford.edu.ORCID http://orcid.org/0000-0002-6768-4000
Stony Brook University · USStanford University · USHudsonAlpha Institute for Biotechnology · USMax Planck Society · DEArizona State University · USBroad Institute · USDePaul University · USFarmingdale State College · USHoward Hughes Medical Institute · USMuseum of Vertebrate Zoology · USTulane University · USUniversity of Arizona · US

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Genomic Basis of Vertebrate DiversityP50HG002568 · NHGRI · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 2002 to 2011
$29.2M
GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
Dynamics of Contemporary Genomic Evolution in Replicate Threespine Stickleback PopulationsR01GM124330 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI VEERAMAH, KRISHNA R · 2017 to 2021
$1.6M
NHGRI NIH HHS P50 HG002568NIEHS NIH HHS P30 ES006694NIGMS NIH HHS R01 GM124330NIGMS NIH HHS T32 GM007790
6 · The paper itself

Abstract

Similar forms often evolve repeatedly in nature, raising long-standing questions about the underlying mechanisms. Here, we use repeated evolution in stickleback to identify a large set of genomic loci that change recurrently during colonization of freshwater habitats by marine fish. The same loci used repeatedly in extant populations also show rapid allele frequency changes when new freshwater populations are experimentally established from marine ancestors. Marked genotypic and phenotypic changes arise within 5 years, facilitated by standing genetic variation and linkage between adaptive regions. Both the speed and location of changes can be predicted using empirical observations of recurrence in natural populations or fundamental genomic features like allelic age, recombination rates, density of divergent loci, and overlap with mapped traits. A composite model trained on these stickleback features can also predict the location of key evolutionary loci in Darwin's finches, suggesting that similar features are important for evolution across diverse taxa.

Identifiers

PMID34144992
PMCPMC8213234
OpenAlexW3167867098

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.