Evidence map›Paper›PMID 34142657›Full record

ArticleeLife2021

The linear ubiquitin chain assembly complex (LUBAC) generates heterotypic ubiquitin chains.

Alan Rodriguez Carvajal, Irina Grishkovskaya, Carlos Gomez Diaz, Antonia Vogel, Adar Sonn-Segev, Manish S Kushwah, Katrin Schodl, Luiza Deszcz, Zsuzsanna Orban-Nemeth, Shinji Sakamoto and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  5. Review
  6. Induced necroptosis limitsInfection and immunity · 2025
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  7. Proteostasis of immune checkpoint receptors.The Biochemical journal · 2025
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  9. The Molecular Toolbox for Linkage Type-Specific Analysis of Ubiquitin Signaling.Chembiochem : a European journal of chemical biology · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. HOIL1 mediates MDA5 activation through ubiquitination of LGP2.bioRxiv : the preprint server for biology · 2024
    Article
  16. Article
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  18. Article
  19. Article
  20. Plant direct · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Alan Rodriguez CarvajalInstitute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0002-8340-8620
Irina GrishkovskayaResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.
Carlos Gomez DiazInstitute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0002-6416-806X
Antonia VogelResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.
Adar Sonn-SegevDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, United Kingdom.
Manish S KushwahDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, United Kingdom.
Katrin SchodlInstitute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria.
Luiza DeszczInstitute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria.
Zsuzsanna Orban-NemethResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.
Shinji SakamotoPharmaceutical Frontier Research Labs, JT Inc., Yokohama, Japan.ORCID 0000-0003-2480-2940
Karl MechtlerResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.
Philipp KukuraDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, United Kingdom.
Tim ClausenResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0003-1582-6924
David HaselbachResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0002-5276-5633
Fumiyo IkedaInstitute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0003-0407-2768
Research Institute of Molecular Pathology · ATInstitute of Molecular Biotechnology · ATUniversity of Oxford · GB

Funding

Austrian Science Fund FWF I 3686
6 · The paper itself

Abstract

The linear ubiquitin chain assembly complex (LUBAC) is the only known ubiquitin ligase for linear/Met1-linked ubiquitin chain formation. One of the LUBAC components, heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1L), was recently shown to catalyse oxyester bond formation between ubiquitin and some substrates. However, oxyester bond formation in the context of LUBAC has not been directly observed. Here, we present the first 3D reconstruction of human LUBAC obtained by electron microscopy and report its generation of heterotypic ubiquitin chains containing linear linkages with oxyester-linked branches. We found that this event depends on HOIL-1L catalytic activity. By cross-linking mass spectrometry showing proximity between the catalytic RING-in-between-RING (RBR) domains, a coordinated ubiquitin relay mechanism between the HOIL-1-interacting protein (HOIP) and HOIL-1L ligases is suggested. In mouse embryonic fibroblasts, these heterotypic chains were induced by TNF, which is reduced in cells expressing an HOIL-1L catalytic inactive mutant. In conclusion, we demonstrate that LUBAC assembles heterotypic ubiquitin chains by the concerted action of HOIP and HOIL-1L.

Indexed as

Transcription FactorsUbiquitinUbiquitin-Protein LigasesAnimalsCarrier ProteinsCells, CulturedFemaleFibroblastsHumansMaleMiceMice, Inbred C57BLMice, TransgenicProtein DomainsCarrier ProteinsRBCK1 protein, humanRbck1 protein, mouseRNF31 protein, humanTranscription FactorsUbiquitinUbiquitin-Protein Ligasesbiochemistrychemical biologyE3 ubiquitin ligaseHOIL-1Lmouseoxyester-bond linkageRBRubiquitin

Identifiers

PMID34142657
PMCPMC8245127
OpenAlexW3173061563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.