Evidence map›Paper›PMID 34142100›Full record

ArticleSTAR protocols2021

Chromosome conformation capture assay combined with biotin enrichment for hyperthermophilic archaea.

Naomichi Takemata, Stephen D Bell

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Naomichi TakemataMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.
Stephen D BellMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN 47405, USA.

Funding

Chromosome Archae-tecture: Conserved principles of chromosome organizationR01GM135178 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BELL, STEPHEN DAVID · 2020 to 2023
$1.2M
NIGMS NIH HHS R01 GM135178
6 · The paper itself

Abstract

Chromosome organization in archaea has long been enigmatic due, in part, to the typically small cell size of archaea and the extremophilic nature of many of the model archaeal species studies, rendering live-cell imaging technically challenging. To circumvent these problems, we recently applied chromosome conformation capture combined with biotin enrichment and deep sequencing (Hi-C) to members of hyperthermophilic archaeal genus

Indexed as

Chromosomes, ArchaealBiotinGenes, ArchaealSequence Analysis, DNASulfolobus acidocaldariusBiotinMicrobiologyMolecular BiologySequencing

Identifiers

PMID34142100
PMCPMC8185304

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.