Evidence map›Paper›PMID 34141631›Full record

ArticleFrontiers in cellular and infection microbiology2021

Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of

Helena M B Seth-Smith, Michael Biggel, Tim Roloff, Vladimira Hinic, Thomas Bodmer, Martin Risch, Carlo Casanova, Andreas Widmer, Rami Sommerstein, Jonas Marschall and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Challenges and Strategies in Managing RecurrentGeriatrics (Basel, Switzerland) · 2025
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  5. Unique growth and morphology properties of Clade 5bioRxiv : the preprint server for biology · 2025
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  6. Article
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  9. Microbial genomics · 2025
    Article
  10. Article
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  12. Article
  13. Molecular Epidemiology ofOpen forum infectious diseases · 2024
    Article
  14. The Strain and the Clinical Outcome ofOpen forum infectious diseases · 2024
    Article
  15. Article
  16. Using whole genome sequencing to characterizeAntimicrobial stewardship & healthcare epidemiology : ASHE · 2024
    Article
  17. Advances in diagnostic assays forFrontiers in cellular and infection microbiology · 2024
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Helena M B Seth-SmithDivision of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
Michael BiggelInstitute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.
Tim RoloffDivision of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
Vladimira HinicDivision of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
Thomas BodmerClinical Microbiology, Labormedizinisches Zentrum Dr Risch, Liebefeld, Switzerland.
Martin RischClinical Microbiology, Labormedizinisches Zentrum Dr Risch, Liebefeld, Switzerland.
Carlo CasanovaInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.
Andreas WidmerDivision of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, University Basel, Basel, Switzerland.
Rami SommersteinDepartment of Infectious Diseases, Bern University Hospital and University of Bern, Bern, Switzerland.
Jonas MarschallDepartment of Infectious Diseases, Bern University Hospital and University of Bern, Bern, Switzerland.
Sarah Tschudin-SutterDivision of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, University Basel, Basel, Switzerland.
Adrian EgliDivision of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland.
University Hospital of Basel · CHLabormedizinische Zentrum Dr Risch (Switzerland) · CHUniversity Hospital of Bern · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Bern · CHUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Clostridioides difficileClostridium InfectionsClostridioidesHumansMultilocus Sequence TypingPolymerase Chain ReactionRibotypingSwitzerlandWhole Genome SequencingcgMLSTClostridioides difficilecore genomemolecular epidemiologyribotypingsingle nucleotide polymorphismwhole genome sequencing

Identifiers

PMID34141631
PMCPMC8204696
OpenAlexW3172832532

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.