Evidence map›Paper›PMID 34141199›Full record

ArticleEcology and evolution2021

Deep learning-based pose estimation for African ungulates in zoos.

Max Hahn-Klimroth, Tobias Kapetanopoulos, Jennifer Gübert, Paul Wilhelm Dierkes

Abstract read
In one paragraph

Article in Ecology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Max Hahn-KlimrothDepartment of Computer Science and Mathematics Goethe University Frankfurt Germany.ORCID https://orcid.org/0000-0002-3995-419X
Tobias KapetanopoulosDepartment of Computer Science and Mathematics Goethe University Frankfurt Germany.
Jennifer GübertFaculty of Biological Sciences Bioscience Education and Zoo Biology Goethe University Frankfurt Germany.
Paul Wilhelm DierkesFaculty of Biological Sciences Bioscience Education and Zoo Biology Goethe University Frankfurt Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The description and analysis of animal behavior over long periods of time is one of the most important challenges in ecology. However, most of these studies are limited due to the time and cost required by human observers. The collection of data via video recordings allows observation periods to be extended. However, their evaluation by human observers is very time-consuming. Progress in automated evaluation, using suitable deep learning methods, seems to be a forward-looking approach to analyze even large amounts of video data in an adequate time frame.In this study, we present a multistep convolutional neural network system for detecting three typical stances of African ungulates in zoo enclosures which works with high accuracy. An important aspect of our approach is the introduction of model averaging and postprocessing rules to make the system robust to outliers.Our trained system achieves an in-domain classification accuracy of >0.92, which is improved to >0.96 by a postprocessing step. In addition, the whole system performs even well in an out-of-domain classification task with two unknown types, achieving an average accuracy of 0.93. We provide our system at https://github.com/Klimroth/Video-Action-Classifier-for-African-Ungulates-in-Zoos/tree/main/mrcnn_based so that interested users can train their own models to classify images and conduct behavioral studies of wildlife.The use of a multistep convolutional neural network for fast and accurate classification of wildlife behavior facilitates the evaluation of large amounts of image data in ecological studies and reduces the effort of manual analysis of images to a high degree. Our system also shows that postprocessing rules are a suitable way to make species-specific adjustments and substantially increase the accuracy of the description of single behavioral phases (number, duration). The results in the out-of-domain classification strongly suggest that our system is robust and achieves a high degree of accuracy even for new species, so that other settings (e.g., field studies) can be considered.

Indexed as

animal behavior statesautomated monitoringconvolutional neural networksdeep learning toolsecology of savannah animalsimage classification

Identifiers

PMID34141199
PMCPMC8207365

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.