Evidence map›Paper›PMID 34141138›Full record

ReviewComputational and structural biotechnology journal2021

Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations.

Xiang Sheng, Fahmi Himo

Open access · goldAbstract readReview
In one paragraph

Review in Computational and structural biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Enzymatic Conversion of COChemical reviews · 2023
    Review
  5. The Quantum Chemical Cluster Approach in Biocatalysis.Accounts of chemical research · 2023
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Xiang ShengNational Engineering Laboratory for Industrial Enzymes and Tianjin Engineering Research Center of Biocatalytic Technology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, and National Technology Innovation Center for Synthetic Biology, Tianjin 300308, PR China.
Fahmi HimoDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, SE-10691 Stockholm, Sweden.
Chinese Academy of Sciences · CNStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantum chemical calculations are today an extremely valuable tool for studying enzymatic reaction mechanisms. In this mini-review, we summarize our recent work on several metal-dependent decarboxylases, where we used the so-called cluster approach to decipher the details of the reaction mechanisms, including elucidation of the identity of the metal cofactors and the origins of substrate specificity. Decarboxylases are of growing potential for biocatalytic applications, as they can be used in the synthesis of novel compounds of,

Indexed as

2,3-DHBD, 2,3‐dihydroxybenzoic acid decarboxylase2,6-DHBD, 2,6‐dihydroxybenzoic acid decarboxylase2-NR, 2-nitroresorcinol5caU, 5-carboxyuracil5-CV, 5-carboxyvanillate5-NV, 5-nitrovanillateAHS, amidohydrolase superfamilyBiocatalysisDecarboxylaseDensity functional theoryIDCase, iso-orotate decarboxylaseLigW, 5‐carboxyvanillate decarboxylaseMIMS, membrane inlet mass spectrometryQM/MM, quantum mechanics/molecular mechanicsReaction mechanismTransition stateγ-RSD, γ‐resorcylate decarboxylaseγ-RS, γ-resorcylate

Identifiers

PMID34141138
PMCPMC8187880
OpenAlexW3164044002

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.