Evidence map›Paper›PMID 34140522›Full record

ArticleNPJ vaccines2021

A cautionary perspective regarding the isolation and serial propagation of SARS-CoV-2 in Vero cells.

Simon G P Funnell, Babak Afrough, John James Baczenas, Neil Berry, Kevin R Bewley, Rebecca Bradford, Clint Florence, Yann Le Duff, Mark Lewis, Ryan V Moriarty and 7 more

Open access · goldAbstract read
In one paragraph

Article in NPJ vaccines, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 2 syntheses or guidelines pooled it, 40 citations in OpenAlex.

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  20. A collaborative study to establish the national standard for SARS-CoV-2 RNA nucleic acid amplification techniques (NAAT) in Taiwan.Biologicals : journal of the International Association of Biological Standardization · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Simon G P FunnellPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.ORCID http://orcid.org/0000-0002-4254-2751
Babak AfroughPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.
John James BaczenasWisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-6791-5470
Neil BerryDivision of Infectious Disease Diagnostics, National Institute for Biological Standards and Control, London, UK.ORCID http://orcid.org/0000-0003-4263-7571
Kevin R BewleyPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.ORCID http://orcid.org/0000-0002-9078-6734
Rebecca BradfordBiodefense and Emerging Infections Resources, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-3712-0850
Clint FlorenceOffice of Biodefense, Research Resources and Translational Research, Division of Microbiology and Infectious Diseases, NIAID, NIH, Bethesda, MD, USA.
Yann Le DuffDivision of Infectious Disease Diagnostics, National Institute for Biological Standards and Control, London, UK.
Mark LewisOffice of Biodefense, Research Resources and Translational Research, Division of Microbiology and Infectious Diseases, NIAID, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-7852-0135
Ryan V MoriartyWisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0001-7100-1906
Shelby L O ConnorWisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-0183-5010
Karen L OsmanPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.ORCID http://orcid.org/0000-0002-8095-3850
Steven PullanPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.
Sujatha RashidBiodefense and Emerging Infections Resources, NIH, Bethesda, MD, USA.
Kevin S RichardsPHE Porton Down, National Infection Service, Public Health England, Salisbury, Wiltshire, UK.ORCID http://orcid.org/0000-0002-3291-4873
Kimberly J StempleOffice of Biodefense, Research Resources and Translational Research, Division of Microbiology and Infectious Diseases, NIAID, NIH, Bethesda, MD, USA.
Ivana KnezevicWorld Health Organization, Geneva, Switzerland. knezevici@who.int.ORCID http://orcid.org/0000-0002-6441-7601
Public Health England · GBNational Institute of Allergy and Infectious Diseases · USUniversity of Wisconsin–Madison · USNational Institute for Biological Standards and Control · GBNorwich Research Park · GBOxford Brookes University · GBWorld Health Organization · CH

Funding

NIAID NIH HHS HHSN272201600013CWorld Health Organization 001
6 · The paper itself

Abstract

An array of SARS-CoV-2 virus variants have been isolated, propagated and used in in vitro assays, in vivo animal studies and human clinical trials. Observations of working stocks of SARS-CoV-2 suggest that sequential propagation in Vero cells leads to critical changes in the region of the furin cleavage site, which significantly reduce the value of the working stock for critical research studies. Serially propagating SARS-CoV-2 in Vero E6 cells leads to rapid increases in genetic variants while propagation in other cell lines (e.g. Vero/hSLAM) appears to mitigate this risk thereby improving the overall genetic stability of working stocks. From these observations, investigators are urged to monitor genetic variants carefully when propagating SARS-CoV-2 in Vero cells.

Identifiers

PMID34140522
PMCPMC8211640
OpenAlexW3168450588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.