Evidence map›Paper›PMID 34140468›Full record

ArticleNature communications2021

CRISPR-Associated Primase-Polymerases are implicated in prokaryotic CRISPR-Cas adaptation.

Katerina Zabrady, Matej Zabrady, Peter Kolesar, Arthur W H Li, Aidan J Doherty

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Reverse transcriptases prime DNA synthesis.Nucleic acids research · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Katerina Zabrady *Genome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0003-1946-0851
Matej Zabrady *Genome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0002-1356-3270
Peter KolesarGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.
Arthur W H LiGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK.
Aidan J DohertyGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, UK. ajd21@sussex.ac.uk.ORCID 0000-0002-6370-1109
University of Sussex · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F013795/1Biotechnology and Biological Sciences Research Council BB/J018643/1Biotechnology and Biological Sciences Research Council BB/M004236/1
6 · The paper itself

Abstract

CRISPR-Cas pathways provide prokaryotes with acquired "immunity" against foreign genetic elements, including phages and plasmids. Although many of the proteins associated with CRISPR-Cas mechanisms are characterized, some requisite enzymes remain elusive. Genetic studies have implicated host DNA polymerases in some CRISPR-Cas systems but CRISPR-specific replicases have not yet been discovered. We have identified and characterised a family of CRISPR-Associated Primase-Polymerases (CAPPs) in a range of prokaryotes that are operonically associated with Cas1 and Cas2. CAPPs belong to the Primase-Polymerase (Prim-Pol) superfamily of replicases that operate in various DNA repair and replication pathways that maintain genome stability. Here, we characterise the DNA synthesis activities of bacterial CAPP homologues from Type IIIA and IIIB CRISPR-Cas systems and establish that they possess a range of replicase activities including DNA priming, polymerisation and strand-displacement. We demonstrate that CAPPs operonically-associated partners, Cas1 and Cas2, form a complex that possesses spacer integration activity. We show that CAPPs physically associate with the Cas proteins to form bespoke CRISPR-Cas complexes. Finally, we propose how CAPPs activities, in conjunction with their partners, may function to undertake key roles in CRISPR-Cas adaptation.

Indexed as

CRISPR-Cas SystemsBacteriaBacterial ProteinsBacteroidetesComputational BiologyCRISPR-Associated ProteinsDimerizationDNA-Directed DNA PolymeraseDNA PrimaseDNA PrimersEscherichia coliGene ExpressionMutationPhylogenyProkaryotic CellsRecombinant ProteinsBacterial ProteinsCRISPR-Associated ProteinsDNA-Directed DNA PolymeraseDNA PrimaseDNA PrimersRecombinant ProteinsRibonucleotides

Identifiers

PMID34140468
PMCPMC8211822
OpenAlexW3167776998

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.