Evidence map›Paper›PMID 34140336›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.

Xingbo Yang, Matthias Heinemann, Jonathon Howard, Greg Huber, Srividya Iyer-Biswas, Guillaume Le Treut, Michael Lynch, Kristi L Montooth, Daniel J Needleman, Simone Pigolotti and 8 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Energy constraint on human health.Trends in endocrinology and metabolism: TEM · 2026
    Review
  2. Article
  3. When energy is scarce, evolution selects dormancy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Inorganic phosphate and the rapid mobilization of metabolic energy in neurons.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Metabolic rewiring and biomass redistribution enable optimized mixotrophic growth in Chlamydomonas.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Bioenergetics and the Evolution of Cellular Traits.Annual review of biophysics · 2025
    Review
  19. Exploring the Frontiers of Cell Temperature Measurement and Thermogenesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Xingbo YangDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138; xingbo_yang@fas.harvard.edu pjfoster@mit.edu.ORCID 0000-0002-5798-4448
Matthias HeinemannMolecular Systems Biology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG Groningen, The Netherlands.ORCID 0000-0002-5512-9077
Jonathon HowardDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT 06511.ORCID 0000-0003-0086-1196
Greg HuberTheory Group, Chan Zuckerberg Biohub, San Francisco, CA 94158.ORCID 0000-0001-8565-3067
Srividya Iyer-BiswasDepartment of Physics and Astronomy, Purdue University, West Lafayette, IN 47907.
Guillaume Le TreutTheory Group, Chan Zuckerberg Biohub, San Francisco, CA 94158.ORCID 0000-0002-9842-2804
Michael LynchBiodesign Center for Mechanisms of Evolution, Arizona State University, Tempe, AZ 85287.ORCID 0000-0002-1653-0642
Kristi L MontoothSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE 68502.ORCID 0000-0001-9456-6694
Daniel J NeedlemanDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138.
Simone PigolottiBiological Complexity Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.ORCID 0000-0002-6157-6906
Jonathan RodenfelsMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.ORCID 0000-0003-3538-8482
Pierre RoncerayCenter for the Physics of Biological Function, Princeton University, Princeton, NJ 08544.ORCID 0000-0002-9012-7544
Sadasivan ShankarJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.
Iman TavassolyMount Sinai Institute for Systems Biomedicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Shashi ThutupalliSimons Centre for the Study of Living Machines, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India.ORCID 0000-0002-4728-937X
Denis V TitovDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, CA 94720.ORCID 0000-0001-5677-0651
Jin WangDepartment of Chemistry, Physics and Applied Mathematics, State University of New York at Stony Brook, Stony Brook, NY 11794.
Peter J FosterPhysics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139 xingbo_yang@fas.harvard.edu pjfoster@mit.edu.ORCID 0000-0003-1818-5886

Funding

Causes and Population-genetic Consequences of Molecular VariationR35GM122566 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Michael R LYNCH · 2017 to 2026
$7.7M
Cell Biological Limitations Constrain Dendritic Branching Morphology and Neuronal FunctionDP1MH110065 · NIMH · YALE UNIVERSITY · PI HOWARD, JONATHON · 2015 to 2019
$4.2M
Metastable dynamics in cortical circuitsUF1NS115779 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI BRINKMAN, BRADEN, FONTANINI, ALFREDO · 2020 to 2020
$3.6M
Causes and consequences of mitochondrial dysfunction in oocytes and cumulus cellsR01HD092550 · NICHD · BRIGHAM AND WOMEN'S HOSPITAL · PI GINSBURG, ELIZABETH S, RACOWSKY, CATHERINE · 2017 to 2021
$2.6M
Genetically encoded tools for manipulation of metabolism in vivoDP2GM132933 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI TITOV, DENIS VASILIEVICH · 2018 to 2018
$2.4M
Theoretical and experimental investigation of multi-domain protein folding and conformational dynamicsR01GM124177 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI WANG, JIN · 2018 to 2021
$1.8M
KITP Interdisciplinary Biology InitiativeR25GM067110 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SHRAIMAN, BORIS I · 2003 to 2018
$1.8M
Control of microtubule length by polymerases and depolymerasesR01GM110386 · NIGMS · YALE UNIVERSITY · PI HOWARD, JONATHON · 2014 to 2017
$1.6M
The dynamic energy budget of vertebrate embryogenesisR21HD094013 · NICHD · YALE UNIVERSITY · PI NEUGEBAUER, KARLA M · 2018 to 2019
$461k
NICHD NIH HHS R01 HD092550NICHD NIH HHS R21 HD094013NIGMS NIH HHS DP2 GM132933NIGMS NIH HHS R01 GM110386NIGMS NIH HHS R01 GM124177NIGMS NIH HHS R25 GM067110NIGMS NIH HHS R35 GM122566NIMH NIH HHS DP1 MH110065NINDS NIH HHS UF1 NS115779
6 · The paper itself

Abstract

Cells are the basic units of all living matter which harness the flow of energy to drive the processes of life. While the biochemical networks involved in energy transduction are well-characterized, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and if so how do energetic constraints impact cellular functions? Physics has provided many tools to study nonequilibrium systems and to define physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics, which resides at the interface of nonequilibrium physics, energy metabolism, and cell biology, seeks to understand how much energy cells are using, how they partition this energy between different cellular processes, and the associated energetic constraints. Here we review recent advances and discuss open questions and challenges in physical bioenergetics.

Indexed as

Energy MetabolismPhysical PhenomenaCellsenergetic constraintsenergetic costsenergy fluxesphysical bioenergetics

Identifiers

PMID34140336
PMCPMC8255778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.