Evidence map›Paper›PMID 34139988›Full record

ArticleBMC genomics2021

Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells.

Wiruntita Chankeaw, Sandra Lignier, Christophe Richard, Theodoros Ntallaris, Mariam Raliou, Yongzhi Guo, Damien Plassard, Claudia Bevilacqua, Olivier Sandra, Göran Andersson and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Wiruntita ChankeawDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, SLU, PO Box 7054, 750 07, Uppsala, Sweden.
Sandra LignierUniversité Paris-Saclay, UVSQ, INRAE, BREED, 78350, Jouy-en-Josas, France.
Christophe RichardUniversité Paris-Saclay, UVSQ, INRAE, BREED, 78350, Jouy-en-Josas, France.
Theodoros NtallarisDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, SLU, PO Box 7054, 750 07, Uppsala, Sweden.
Mariam RaliouUniversité Paris-Saclay, UVSQ, INRAE, BREED, 78350, Jouy-en-Josas, France.
Yongzhi GuoDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, SLU, PO Box 7054, 750 07, Uppsala, Sweden.
Damien PlassardGenomEast Platform CERBM GIE, IGBMC, 67404, Illkirch Cedex, France.
Claudia BevilacquaUniversité Paris-Saclay, INRAE, AgroParisTech, GABI, 78350, Jouy en Josas, France.
Olivier SandraUniversité Paris-Saclay, UVSQ, INRAE, BREED, 78350, Jouy-en-Josas, France.
Göran AnderssonDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, SLU, PO Box 7023, 750 07, Uppsala, Sweden.
Patrice HumblotDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, SLU, PO Box 7054, 750 07, Uppsala, Sweden.
Gilles CharpignyUniversité Paris-Saclay, UVSQ, INRAE, BREED, 78350, Jouy-en-Josas, France. gilles.charpigny@inrae.fr.ORCID http://orcid.org/0000-0003-3954-7663
Université de Versailles Saint-Quentin-en-Yvelines · FRSwedish University of Agricultural Sciences · SEAgroParisTech · FRInstitut de génétique et de biologie moléculaire et cellulaire · FRRajamangala University of Technology · TH

Funding

Seventh Framework Programme FP7-KBBE-2012-6 Prolific and Grant agreement number 311776
6 · The paper itself

Abstract

backgroundIn post-partum dairy cows, the energy needs to satisfy high milk production induces a status of more or less pronounced Negative Energy Balance (NEB). NEB associated with fat mobilization impairs reproductive function. In a companion paper, we described constitutive gene expression in the three main endometrial cell types (stromal, glandular and luminal epithelial cells) isolated by laser capture micro-dissection (LCM) showing the specificities of their transcriptomic profiles. This study investigates the specific impact of NEB on gene expression in these cells around 80 days after parturition at day 15 of the oestrus cycle and describes their specific response to NEB.

resultsFollowing the description of their constitutive expression, the transcriptome profiles obtained by RNA sequencing of the three cells types revealed that differences related to the severity of NEB altered mainly specific patterns of expression related to individual cell types. Number of differentially expressed genes between severe NEB (SNEB) and mild NEB (MNEB) cows was higher in ST than in LE and GE, respectively. SNEB was associated with differential expression of genes coding for proteins involved in metabolic processes and embryo-maternal interactions in ST. Under-expression of genes encoding proteins with functions related to cell structure was found in GE whereas genes encoding proteins participating in pro-inflammatory pathways were over-expressed. Genes associated to adaptive immunity were under-expressed in LE.

conclusionThe severity of NEB after calving is associated with changes in gene expression around 80 days after parturition corresponding to the time of breeding. Specific alterations in GEs are associated with activation of pro-inflammatory mechanisms. Concomitantly, changes in the expression of genes encoding proteins involved in cell interactions and maternal recognition of pregnancy takes place in ST. The combination of these effects possibly altering the uterine environment and embryo maternal interactions may negatively influence the establishment of pregnancy.

Indexed as

Postpartum PeriodTranscriptomeAnimalsCattleDissectionEnergy MetabolismEpithelial CellsFemaleHumansLactationLasersPregnancyCell type-specificEndometriumInflammationLCMNegative energy balanceRNA-seqTranscriptome

Identifiers

PMID34139988
PMCPMC8212477
OpenAlexW3165911038

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.