Evidence map›Paper›PMID 34138958›Full record

ArticlePloS one2021

Immunoinformatics and molecular dynamics approaches: Next generation vaccine design against West Nile virus.

Md Tahsin Khan, Rahatul Islam, Tarhima Jahan Jerin, Araf Mahmud, Sahara Khatun, Ahasanul Kobir, Md Nahidul Islam, Arzuba Akter, Shakhinur Islam Mondal

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Md Tahsin KhanDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.ORCID 0000-0003-3309-3218
Rahatul IslamDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.ORCID 0000-0002-1889-3316
Tarhima Jahan JerinDepartment of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh.ORCID 0000-0001-9415-9335
Araf MahmudDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.
Sahara KhatunDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.ORCID 0000-0001-7283-5929
Ahasanul KobirUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Md Nahidul IslamDepartment of Biochemistry, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.
Arzuba AkterDepartment of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.
Shakhinur Islam MondalDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, Bangladesh.ORCID 0000-0002-8366-7745
Shahjalal University of Science and Technology · BDMawlana Bhashani Science and Technology University · BDOllscoil na Gaillimhe – University of Galway · IEUPMC Hillman Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

West Nile Virus (WNV) is a life threatening flavivirus that causes significant morbidity and mortality worldwide. No preventive therapeutics including vaccines against WNV are available for human use. In this study, immunoinformatics approach was performed to design a multi epitope-based subunit vaccine against this deadly pathogen. Human (HLA) and Mice (H-2) allele specific potential T-cell and B-cell epitopes were shortlisted through a stringent procedure. Molecular docking showed selected epitopes that have stronger binding affinity with human TLR-4. Molecular dynamics simulation confirmed the stable nature of the docked complex. Furthermore, in silico cloning analysis ensures efficient expression of desired gene in the microbial system. Interestingly, previous studies showed that two of our selected epitopes have strong immune response against WNV. Therefore, selected epitopes could be strong vaccine candidates to prevent WNV infections in human. However, further in vitro and in vivo investigations could be strengthening the validation of the vaccine candidate against WNV.

Indexed as

Molecular Dynamics SimulationVaccinesAnimalsDrug DesignEpitopes, T-LymphocyteHumansMiceMolecular Docking SimulationWest Nile FeverWest Nile virusEpitopes, T-LymphocyteVaccines

Identifiers

PMID34138958
PMCPMC8211291
OpenAlexW3171960265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.