Evidence map›Paper›PMID 34137509›Full record

ArticleChemMedChem2021

A Computer-Driven Scaffold-Hopping Approach Generating New PTP1B Inhibitors from the Pyrrolo[1,2-a]quinoxaline Core.

Javier García-Marín, Mercedes Griera, Ramón Alajarín, Manuel Rodríguez-Puyol, Diego Rodríguez-Puyol, Juan J Vaquero

Abstract read
In one paragraph

Article in ChemMedChem, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. The importance of including the C-terminal domain of PTP1BJournal of enzyme inhibition and medicinal chemistry · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Javier García-MarínDepartamento de Química Orgánica y Química Inorgánica, Universidad de Alcalá, 28805, Alcalá de Henares, Spain.ORCID 0000-0002-5883-4783
Mercedes GrieraGraphenano Medical Care, S.L., C/Pablo Casals, no. 13, Yecla, Murcia, Spain.
Ramón AlajarínDepartamento de Química Orgánica y Química Inorgánica, Universidad de Alcalá, 28805, Alcalá de Henares, Spain.ORCID 0000-0002-7573-8013
Manuel Rodríguez-PuyolInstituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Ctra. Colmenar Viejo, km. 9100, 28034, Madrid, Spain.
Diego Rodríguez-PuyolInstituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Ctra. Colmenar Viejo, km. 9100, 28034, Madrid, Spain.
Juan J VaqueroDepartamento de Química Orgánica y Química Inorgánica, Universidad de Alcalá, 28805, Alcalá de Henares, Spain.ORCID 0000-0002-3820-9673

Funding

FEDER funds FPU16/01647FEDER funds PI17/00625FEDER funds PI17/01513FEDER funds RD16/0009/0015FEDER funds RD16/0009/18Instituto de Salud Carlos IIIInstituto de Salud Carlos III FPU16/01647Instituto de Salud Carlos III PI17/00625Instituto de Salud Carlos III RD16/0009/0015Instituto de Salud Carlos III RD16/0009/18, PI17/01513Spanish Ministerio de Economía y Competitividad CTQ2017-85263-R MINECO/FEDER UESpanish Ministerio de Economía y Competitividad CTQ2017-85263-R MINECO/FEDER UE to J.J.V.Spanish Ministerio de Educación y Cultura
6 · The paper itself

Abstract

Protein tyrosine phosphatase 1B (PTP1B) is a very promising target for the treatment of metabolic disorders such as type II diabetes mellitus. Although it was validated as a promising target for this disease more than 30 years ago, as yet there is no drug in advanced clinical trials, and its biochemical mechanism and functions are still being studied. In the present study, based on our experience generating PTP1B inhibitors, we have developed and implemented a scaffold-hopping approach to vary the pyrrole ring of the pyrrolo[1,2-a]quinoxaline core, supported by extensive computational techniques aimed to explain the molecular interaction with PTP1B. Using a combination of docking, molecular dynamics and end-point free-energy calculations, we have rationally designed a hypothesis for new PTP1B inhibitors, supporting their recognition mechanism at a molecular level. After the design phase, we were able to easily synthesize proposed candidates and their evaluation against PTP1B was found to be in good concordance with our predictions. Moreover, the best candidates exhibited glucose uptake increments in cellulo model, thus confirming their utility for PTP1B inhibition and validating this approach for inhibitors design and molecules thus obtained.

Indexed as

Dose-Response Relationship, DrugEnzyme InhibitorsHumansModels, MolecularMolecular StructureProtein Tyrosine Phosphatase, Non-Receptor Type 1PyrrolesQuinoxalinesStructure-Activity RelationshipEnzyme InhibitorsProtein Tyrosine Phosphatase, Non-Receptor Type 1PTPN1 protein, humanPyrrolespyrrolo(1,2-a)quinoxalineQuinoxalinesglucose uptakeMM-ISMSAmolecular dynamicsmolecular modellingPTP1B, phosphatasepyrrolo[1,2-a]quinoxalinescaffold hopping

Identifiers

PMID34137509
PMCPMC8518816

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.