Evidence map›Paper›PMID 34137374›Full record

ArticleeLife2021

BET family members Bdf1/2 modulate global transcription initiation and elongation in

Rafal Donczew, Steven Hahn

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rafal DonczewFred Hutchinson Cancer Research Center, Division of Basic Sciences, Seattle, United States.ORCID 0000-0001-9729-4153
Steven HahnFred Hutchinson Cancer Research Center, Division of Basic Sciences, Seattle, United States.ORCID 0000-0001-7240-2533
Fred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
MOLECULAR ANALYSIS OF RNAPIII TRANSCRIPTION INITIATIONR01GM053451 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 1995 to 2020
$11.4M
Mechanisms of eukaryotic transcription activationR01GM075114 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 2005 to 2020
$7.9M
Mechanisms of transcriptional regulation and transcription factor specificityR35GM140823 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Steven M Hahn · 2021 to 2026
$6.6M
NCI NIH HHS P30 CA015704NIGMS NIH HHS R01 GM053451NIGMS NIH HHS R01 GM075114NIGMS NIH HHS R35 GM140823
6 · The paper itself

Abstract

Human bromodomain and extra-terminal domain (BET) family members are promising targets for therapy of cancer and immunoinflammatory diseases, but their mechanisms of action and functional redundancies are poorly understood. Bdf1/2, yeast homologues of the human BET factors, were previously proposed to target transcription factor TFIID to acetylated histone H4, analogous to bromodomains that are present within the largest subunit of metazoan TFIID. We investigated the genome-wide roles of Bdf1/2 and found that their important contributions to transcription extend beyond TFIID function as transcription of many genes is more sensitive to Bdf1/2 than to TFIID depletion. Bdf1/2 co-occupy the majority of yeast promoters and affect preinitiation complex formation through recruitment of TFIID, Mediator, and basal transcription factors to chromatin. Surprisingly, we discovered that hypersensitivity of genes to Bdf1/2 depletion results from combined defects in transcription initiation and early elongation, a striking functional similarity to human BET proteins, most notably Brd4. Our results establish Bdf1/2 as critical for yeast transcription and provide important mechanistic insights into the function of BET proteins in all eukaryotes.

Indexed as

Saccharomyces cerevisiae ProteinsTranscription Elongation, GeneticTranscription FactorsTranscription Initiation, GeneticBromodomain Containing ProteinsCell Cycle ProteinsGenome, FungalHumansPromoter Regions, GeneticSaccharomyces cerevisiaeBDF1 protein, S cerevisiaeBDF2 protein, S cerevisiaeBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsBET proteinsbromodomainchromosomesgene expressiongeneticsgenomicsmediatorS. cerevisiaeTFIIDtranscription elongationtranscription initiation

Identifiers

PMID34137374
PMCPMC8266393
OpenAlexW3168543688

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.