Evidence map›Paper›PMID 34136834›Full record

ArticleSTAR protocols2021

A C-circle assay for detection of alternative lengthening of telomere activity in FFPE tissue.

Aurora I Idilli, Sandra Segura-Bayona, Timothy P Lippert, Simon J Boulton

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
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  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Aurora I IdilliThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Sandra Segura-BayonaThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Timothy P LippertThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Simon J BoultonThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.

Funding

Cancer Research UK FC0010048Medical Research Council FC0010048Wellcome TrustWellcome Trust FC0010048
6 · The paper itself

Abstract

Alternative lengthening of telomeres (ALT) is a telomerase-independent, recombination-based telomere maintenance mechanism that allows cancer cells to acquire unlimited proliferative capacity. The C-circle assay (CCA) has emerged as the gold standard for quantitative measurement of ALT activity. Here, we present a modified CCA protocol to examine ALT activity in formalin-fixed paraffin-embedded specimens. We optimized several aspects of the procedure including genomic DNA isolation and hybridization steps, which allows for sensitive and robust quantitation of ALT activity in patient biopsies. For complete details on the use and execution of this protocol, please refer to Lippert et al. (2021).

Indexed as

TelomereTelomere HomeostasisHumansIn Situ Hybridization, FluorescenceCancerMolecular Biology

Identifiers

PMID34136834
PMCPMC8182116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.