ArticleComputational and structural biotechnology journal2020
RBinds: A user-friendly server for RNA binding site prediction.
Article in Computational and structural biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- RNA-binding proteins in aging and age-related diseases: roles, mechanisms, and a large language model analysis.Biogerontology · 2026Review
- Review
- Emerging RNA-centric technologies to probe RNA-protein interactions: importance in decoding the life cycle of positive sense single strand RNA viruses and antiviral discovery.Frontiers in cellular and infection microbiology · 2025Review
- Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN.Nature communications · 2024Article
- Prediction of protein-ligand binding affinity via deep learning models.Briefings in bioinformatics · 2024Review
- In Silico Methods for Identification of Potential Active Sites of Therapeutic Targets.Molecules (Basel, Switzerland) · 2022Review
- Computational tools to study RNA-protein complexes.Frontiers in molecular biosciences · 2022Review
- RNA-ligand molecular docking: advances and challenges.Wiley interdisciplinary reviews. Computational molecular scienceArticle
Corrections and comments
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Authors and funding
2 authors.
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Abstract
RNA performs various biological functions by interacting with other molecules. The knowledge of RNA binding sites is essential for the understanding of RNA-protein or RNA-ligand complex structures and their mechanisms. However, the RNA binding site prediction study requires tedious programming scripts and manual handling. One user-friendly bioinformatics tool for RNA binding site prediction has been missing. This limitation motivated us to develop the RBinds, a user-friendly web server, to predict the RNA binding site using a simple graphical user interface. Some advanced features implemented in RBinds are (1) transforming the RNA structure to a network automatically; (2) analyzing the structural network properties to predict binding site; (3) constructing one annotated force-directed network; (4) providing a visualization tool for users to scale and rotate the structure; (5) offering the related tools to predict or simulate RNA structures. RBinds web server is a reliable and user-friendly tool and facilitates the RNA binding site study without installing programs locally. RBinds is freely accessible at http://zhaoserver.com.cn/RBinds/RBinds.html.
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Registered trials
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