Evidence map›Paper›PMID 34135337›Full record

ArticleNature communications2021

Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton.

Yuko Makita, Shigekatsu Suzuki, Keiji Fushimi, Setsuko Shimada, Aya Suehisa, Manami Hirata, Tomoko Kuriyama, Yukio Kurihara, Hidefumi Hamasaki, Emiko Okubo-Kurihara and 9 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Sensing a rainbow of colors: algal photoreceptors.Frontiers in plant science · 2025
    Review
  6. Article
  7. The genome sequence ofWellcome open research · 2023
    Article
  8. Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  9. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Yuko Makita *Synthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Shigekatsu Suzuki *Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan.
Keiji Fushimi *Graduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, Japan.
Setsuko Shimada *Synthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Aya SuehisaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Manami HirataSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Tomoko KuriyamaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Yukio KuriharaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Hidefumi HamasakiSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Emiko Okubo-KuriharaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.
Kazutoshi YoshitakeGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Tsuyoshi WatanabeFisheries Resources Institute, Japan Fisheries Research and Education Agency, Kushiro, Hokkaido, Japan.
Masaaki SakutaDepartment of Biological Sciences, Ochanomizu University, Tokyo, Japan.ORCID http://orcid.org/0000-0002-1784-1899
Takashi GojoboriComputational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Tomoko SakamiFisheries Resources Institute, Japan Fisheries Research and Education Agency, Minami-ise, Mie, Japan.
Rei NarikawaGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, Japan.ORCID http://orcid.org/0000-0001-7891-3510
Haruyo YamaguchiBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan.ORCID http://orcid.org/0000-0001-5269-1614
Masanobu KawachiBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan.
Minami MatsuiSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Yokohama, Japan. minami@riken.jp.ORCID http://orcid.org/0000-0001-5162-2668
RIKEN Center for Sustainable Resource Science · JPNational Institute for Environmental Studies · JPJapan Fisheries Research and Education Agency · JPKihara Institute for Biological Research · JPShizuoka University · JPKing Abdullah University of Science and Technology · SAOchanomizu University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photoreceptors are conserved in green algae to land plants and regulate various developmental stages. In the ocean, blue light penetrates deeper than red light, and blue-light sensing is key to adapting to marine environments. Here, a search for blue-light photoreceptors in the marine metagenome uncover a chimeric gene composed of a phytochrome and a cryptochrome (Dualchrome1, DUC1) in a prasinophyte, Pycnococcus provasolii. DUC1 detects light within the orange/far-red and blue spectra, and acts as a dual photoreceptor. Analyses of its genome reveal the possible mechanisms of light adaptation. Genes for the light-harvesting complex (LHC) are duplicated and transcriptionally regulated under monochromatic orange/blue light, suggesting P. provasolii has acquired environmental adaptability to a wide range of light spectra and intensities.

Indexed as

Oceans and SeasAdaptation, PhysiologicalCell NucleusChlorophytaCryptochromesEvolution, MolecularLightMetagenomeNicotianaPhotoreceptors, PlantPhylogenyPhytochromePhytoplanktonPlant LeavesTranscription, GeneticCryptochromesPhotoreceptors, PlantPhytochrome

Identifiers

PMID34135337
PMCPMC8209157
OpenAlexW3165922298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.