ArticleBioinformatics (Oxford, England)2021
SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction.
Article in Bioinformatics (Oxford, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Genomic characterization ofMicrobiology (Reading, England) · 2026Article
- Genomic islands and plasmid borne antimicrobial resistance genes drive the evolution of high-risk, ST-131 uropathogenic E. coli NS30.BMC genomics · 2025Article
- Leveraging Synteny to Generate Reference Genomes for Conservation: Assembling the Genomes of Hector's and Māui Dolphins.Molecular ecology resources · 2025Article
- SANS ambages: phylogenomics with abundance-filter, multi-threading, and bootstrapping on amino-acid or genomic sequences.BMC bioinformatics · 2025Article
- A reference genome for Trichogramma kaykai: a tiny desert-dwelling parasitoid wasp with competing sex-ratio distorters.G3 (Bethesda, Md.) · 2025Article
- PhyloTune: An efficient method to accelerate phylogenetic updates using a pretrained DNA language model.Nature communications · 2025Article
- Use of Field pathogenomics approach for Puccinia striiformis f. sp. tritici race identification and phylogenomic delineation in North India.World journal of microbiology & biotechnology · 2025Article
- Genome diversity, population structure and MALDI-TOF MS profiling of Aspergillus oryzae/flavus strains from fermentation and wild environments.BMC genomics · 2025Article
- Admixture in the fungal pathogen Blastomyces.Genetics · 2024Article
- Antimicrobial resistance and heterogeneity of Neisseria gonorrhoeae isolated from patients attending sexually transmitted infection clinics in Lusaka, Zambia.BMC genomics · 2024Article
- Methods for Pangenomic Core Detection.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Comparative genomics and transcriptomics reveal differences in effector complement and expression between races ofFrontiers in plant science · 2024Article
- New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae).BMC biology · 2023Article
- phyBWT2: phylogeny reconstruction via eBWT positional clustering.Algorithms for molecular biology : AMB · 2023Article
- The genome of the soybean gall midge (Resseliella maxima).G3 (Bethesda, Md.) · 2023Article
- The Genome of the Soybean Gall Midge (bioRxiv : the preprint server for biology · 2023Article
- Global genomic epidemiology of chromosomally mediated non-enzymatic carbapenem resistance inFrontiers in microbiology · 2023Article
- Phylogenies from unaligned proteomes using sequence environments of amino acid residues.Scientific reports · 2022Article
- Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives.BMC genomics · 2022Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
summarySANS serif is a novel software for alignment-free, whole-genome-based phylogeny estimation that follows a pangenomic approach to efficiently calculate a set of splits in a phylogenetic tree or network. AVAILABILITY AND IMPLEMENTATION: Implemented in C++ and supported on Linux, MacOS and Windows. The source code is freely available for download at https://gitlab.ub.uni-bielefeld.de/gi/sans. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Registered trials
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