Evidence map›Paper›PMID 34132745›Full record

ArticleThe Journal of cell biology2021

Nano-scale resolution of native retinal rod disk membranes reveals differences in lipid composition.

Christopher L Sander, Avery E Sears, Antonio F M Pinto, Elliot H Choi, Shirin Kahremany, Fangyuan Gao, David Salom, Hui Jin, Els Pardon, Susie Suh and 6 more

Abstract read
In one paragraph

Article in The Journal of cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  14. Article
  15. Article
  16. Beyond Fluidity: The Role of Lipid Unsaturation in Membrane Function.Cold Spring Harbor perspectives in biology · 2023
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Christopher L SanderDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-1680-6637
Avery E SearsDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH.ORCID 0000-0001-8878-6391
Antonio F M PintoClayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies, La Jolla, CA.ORCID 0000-0002-1573-8011
Elliot H ChoiDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH.
Shirin KahremanyDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.
Fangyuan GaoDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.ORCID 0000-0002-1270-8781
David SalomDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.ORCID 0000-0002-3208-1509
Hui JinDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH.
Els PardonVlaams Instituut voor Biotechnologie-Vrije Universiteit Brussel Center for Structural Biology, Vlaams Instituut voor Biotechnologie, Brussels, Belgium.
Susie SuhDepartment of Pharmacology, Case Western Reserve University, Cleveland, OH.
Zhiqian DongDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.
Jan SteyaertVlaams Instituut voor Biotechnologie-Vrije Universiteit Brussel Center for Structural Biology, Vlaams Instituut voor Biotechnologie, Brussels, Belgium.
Alan SaghatelianClayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies, La Jolla, CA.ORCID 0000-0002-0427-563X
Dorota Skowronska-KrawczykDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.ORCID 0000-0002-5758-4225
Philip D KiserDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.ORCID 0000-0003-1184-9539
Krzysztof PalczewskiDepartment of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA.ORCID 0000-0002-0788-545X

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Irina A Pikuleva · 1997 to 2026
$17.7M
STRUCTURAL STUDIES OF ARRESTINSR01EY009339 · NEI · UNIVERSITY OF WASHINGTON · PI KISER, PHILIP DAVID, PALCZEWSKI, KRZYSZTOF · 1992 to 2025
$16.0M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Use of systems pharmacology to prevent rod and cone photoreceptor degenerationR24EY027283 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI PALCZEWSKI, KRZYSZTOF · 2017 to 2021
$7.9M
VISUAL SCIENCES TRAINING PROGRAMT32EY007157 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Johannes Friedrich von Lintig · 2000 to 2026
$5.5M
PREDOCTORAL TRAINING PROGRAM IN MOLECULAR THERAPEUTICST32GM008803 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI MIEYAL, JOHN J, NIEMAN, MARVIN THOMAS · 2001 to 2023
$4.2M
The complex role of phosphodiesterase 6 in rod photoreceptor health and functionR01EY030873 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Krzysztof Palczewski · 2020 to 2026
$3.5M
MECHANISMS OF ADAPTATION IN MAMMALIAN CONESR01EY019312 · NEI · WASHINGTON UNIVERSITY · PI KEFALOV, VLADIMIR JIVKOV · 2009 to 2017
$3.3M
Cole Eye Institute Vision Science Training ProgramT32EY024236 · NEI · CLEVELAND CLINIC LERNER COM-CWRU · PI ANAND-APTE, BELA · 2015 to 2025
$1.0M
A Hybrid Quadrupole-Orbitrap LC/MSS10OD021815 · OD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SAGHATELIAN, ALAN · 2016 to 2016
$580k
CRISPR/Cas9-Mediated Correction of Abca4 Mutations in a Stargardt Mouse ModelF30EY029136 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI SUH, SUSIE · 2019 to 2021
$152k
BLRD VA I01 BX004939NEI NIH HHS F30 EY029136NEI NIH HHS P30 EY011373NEI NIH HHS R01 EY009339NEI NIH HHS R01 EY019312NEI NIH HHS R01 EY030873NEI NIH HHS R24 EY027283NEI NIH HHS T32 EY007157NEI NIH HHS T32 EY024236NIGMS NIH HHS P41 GM103311NIGMS NIH HHS T32 GM007250NIGMS NIH HHS T32 GM008803NIH HHS S10 OD021815
6 · The paper itself

Abstract

Photoreceptors rely on distinct membrane compartments to support their specialized function. Unlike protein localization, identification of critical differences in membrane content has not yet been expanded to lipids, due to the difficulty of isolating domain-specific samples. We have overcome this by using SMA to coimmunopurify membrane proteins and their native lipids from two regions of photoreceptor ROS disks. Each sample's copurified lipids were subjected to untargeted lipidomic and fatty acid analysis. Extensive differences between center (rhodopsin) and rim (ABCA4 and PRPH2/ROM1) samples included a lower PC to PE ratio and increased LC- and VLC-PUFAs in the center relative to the rim region, which was enriched in shorter, saturated FAs. The comparatively few differences between the two rim samples likely reflect specific protein-lipid interactions. High-resolution profiling of the ROS disk lipid composition gives new insights into how intricate membrane structure and protein activity are balanced within the ROS, and provides a model for future studies of other complex cellular structures.

Indexed as

Alcohol OxidoreductasesAnimalsATP-Binding Cassette TransportersCattleCell MembraneEye ProteinsLipidomicsMembrane LipidsMembrane ProteinsMiceMice, Inbred BALB CMice, KnockoutMicroscopy, Electron, TransmissionNanotechnologyPeripherinsRetinal Rod Photoreceptor CellsAbca4 protein, mouseAlcohol OxidoreductasesATP-Binding Cassette TransportersEye ProteinsHSD17B6 protein, mouseMembrane LipidsMembrane ProteinsPeripherinsRhodopsinSingle-Domain AntibodiesTetraspanins

Identifiers

PMID34132745
PMCPMC8240855

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.