Evidence map›Paper›PMID 34132569›Full record

ArticleJournal of virology2021

Specific Interaction of DDX6 with an RNA Hairpin in the 3' UTR of the Dengue Virus Genome Mediates G

Opas Choksupmanee, Worapol Tangkijthavorn, Kenneth Hodge, Krittanai Trisakulwattana, Worawich Phornsiricharoenphant, Veerakorn Narkthong, Sarun Tulakarnwong, Chumpol Ngamphiw, Sissades Tongsima, Sarin Chimnaronk

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Opas Choksupmanee *The Laboratory of RNA Biology, Institute of Molecular Biosciences, Mahidol University, Salaya Campus, Nakhon Pathom, Thailand.
Worapol Tangkijthavorn *The Laboratory of RNA Biology, Institute of Molecular Biosciences, Mahidol University, Salaya Campus, Nakhon Pathom, Thailand.
Kenneth Hodge *Systems Biology Center, Research Affairs, Faculty of Medicine, Chulalongkorn University, Pathumwan, Bangkok, Thailand.
Krittanai TrisakulwattanaThe Laboratory of RNA Biology, Institute of Molecular Biosciences, Mahidol University, Salaya Campus, Nakhon Pathom, Thailand.
Worawich PhornsiricharoenphantNational Biobank of Thailand, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Khlong Luang, Pathum Thani, Thailand.
Veerakorn NarkthongSiriraj Center of Research Excellence for Systems Pharmacology, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Sarun TulakarnwongSiriraj Center of Research Excellence for Systems Pharmacology, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Chumpol NgamphiwNational Biobank of Thailand, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Khlong Luang, Pathum Thani, Thailand.
Sissades TongsimaNational Biobank of Thailand, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Khlong Luang, Pathum Thani, Thailand.
Sarin ChimnaronkThe Laboratory of RNA Biology, Institute of Molecular Biosciences, Mahidol University, Salaya Campus, Nakhon Pathom, Thailand.
Siriraj Hospital · THNational Science and Technology Development Agency · THMahidol University · THChulalongkorn University · TH

Funding

Chulalongkorn University (CU) Rachadaphiseksompot Fund for Postdoctoral FellowshipMahidol University (มหาวิทยาลัยมหิดล) Grants-in-Aids for scientific researchMahidol University (มหาวิทยาลัยมหิดล) RA (Research Assistantship)National Research Council of Thailand (NRCT) Young Researcher Development ProgramThailand Research Fund (TRF) Mid-Career Grant (RSA6080066)
6 · The paper itself

Abstract

The extent to which viral genomic RNAs interact with host factors and contribute to host response and disease pathogenesis is not well known. Here, we report that the human RNA helicase DDX6 specifically binds to the viral most conserved RNA hairpin in the A3 element in the dengue 3' UTR, with nanomolar affinities. DDX6 CLIP confirmed the interaction in HuH-7 cells infected by dengue virus serotype 2. This interaction requires three conserved residues-Lys

Indexed as

3' Untranslated RegionsG1 Phase Cell Cycle CheckpointsGenome, ViralDEAD-box RNA HelicasesDengueDengue VirusHumansNucleic Acid ConformationProto-Oncogene ProteinsRNA, ViralVirus Replication3' Untranslated RegionsDDX6 protein, humanDEAD-box RNA HelicasesProto-Oncogene ProteinsRNA, Viralcell cycledengue virusDENVhost-virus interactionRNA helicaseuntranslated regionUTRviral RNA

Identifiers

PMID34132569
PMCPMC8354244
OpenAlexW3167653587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.