Evidence map›Paper›PMID 34131130›Full record

ArticleNature communications2021

An L-2-hydroxyglutarate biosensor based on specific transcriptional regulator LhgR.

Zhaoqi Kang, Manman Zhang, Kaiyu Gao, Wen Zhang, Wensi Meng, Yidong Liu, Dan Xiao, Shiting Guo, Cuiqing Ma, Chao Gao and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 40 citations in OpenAlex.

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  11. An Artificial Pathway forFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Zhaoqi KangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Manman ZhangTianjin Key Laboratory of Radiation Medicine and Molecular Nuclear Medicine, Department of Radiobiology, Institute of Radiation Medicine of Chinese Academy of Medical Science and Peking Union Medical College, Tianjin, People's Republic of China.
Kaiyu GaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Wen ZhangCenter for Gene and Immunotherapy, The Second Hospital of Shandong University, Jinan, People's Republic of China.
Wensi MengState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Yidong LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Dan XiaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Shiting GuoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Cuiqing MaState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China.
Chao GaoState Key Laboratory of Microbial Technology, Shandong University, Qingdao, People's Republic of China. jieerbu@sdu.edu.cn.ORCID 0000-0002-5205-0670
Ping XuState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China. pingxu@sjtu.edu.cn.ORCID 0000-0002-4418-9680
Shandong University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNSecond Hospital of Shandong University · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

L-2-Hydroxyglutarate (L-2-HG) plays important roles in diverse physiological processes, such as carbon starvation response, tumorigenesis, and hypoxic adaptation. Despite its importance and intensively studied metabolism, regulation of L-2-HG metabolism remains poorly understood and none of regulator specifically responded to L-2-HG has been identified. Based on bacterial genomic neighborhood analysis of the gene encoding L-2-HG oxidase (LhgO), LhgR, which represses the transcription of lhgO in Pseudomonas putida W619, is identified in this study. LhgR is demonstrated to recognize L-2-HG as its specific effector molecule, and this allosteric transcription factor is then used as a biorecognition element to construct an L-2-HG-sensing FRET sensor. The L-2-HG sensor is able to conveniently monitor the concentrations of L-2-HG in various biological samples. In addition to bacterial L-2-HG generation during carbon starvation, biological function of the L-2-HG dehydrogenase and hypoxia induced L-2-HG accumulation are also revealed by using the L-2-HG sensor in human cells.

Indexed as

Biosensing TechniquesGene Expression RegulationBacterial ProteinsBody FluidsEscherichia coliGlutaratesHEK293 CellsHumansOxidoreductasesPseudomonas putidaTranscription Factorsalpha-hydroxyglutarateBacterial ProteinsGlutaratesOxidoreductasesTranscription Factors

Identifiers

PMID34131130
PMCPMC8206213
OpenAlexW3169066315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.