Evidence map›Paper›PMID 34130216›Full record

ArticleBioorganic & medicinal chemistry2021

Synthetic fluorescent MYC probe: Inhibitor binding site elucidation and development of a high-throughput screening assay.

Ryan J Shirey, Jonathan R Hart, BanuPriya Sridharan, Scott J Novick, Lewis D Turner, Bin Zhou, Alexander L Nielsen, Lisa M Eubanks, Lynn Ueno, Mark S Hixon and 6 more

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Ryan J ShireyDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Jonathan R HartDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, United States.
BanuPriya SridharanDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Scott J NovickDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Lewis D TurnerDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Bin ZhouDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Alexander L NielsenDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Lisa M EubanksDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Lynn UenoDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, United States.
Mark S HixonDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Luke L LairsonDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States.
Timothy P SpicerDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Louis D ScampaviaDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Peter K VogtDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, United States.
Kim D JandaDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, United States. Electronic address: kdjanda@scripps.edu.
Scripps Research Institute · US

Funding

Cancer genes: translating basics to applicationsR35CA197582 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI VOGT, PETER K · 2016 to 2022
$7.8M
Investigating Cancer-Specific Long Noncoding RNAs for Early Cancer DetectionR50CA243899 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI HART, JONATHAN ROSS · 2019 to 2021
$434k
NCI NIH HHS R35 CA197582NCI NIH HHS R50 CA243899
6 · The paper itself

Abstract

We report the discovery of a fluorescent small molecule probe. This probe exhibits an emission increase in the presence of the oncoprotein MYC that can be attenuated by a competing inhibitor. Hydrogen-deuterium exchange mass spectrometry analysis, rationalized by induced-fit docking, suggests it binds to the "coiled-coil" region of the leucine zipper domain. Point mutations of this site produced functional MYC constructs resistant to inhibition in an oncogenic transformation assay by compounds that displace the probe. Utilizing this probe, we have developed a high-throughput assay to identify MYC inhibitor scaffolds. Screening of a diversity library (N = 1408, 384-well) and a library of pharmacologically active compounds (N = 1280, 1536-well) yielded molecules with greater drug-like properties than the probe. One lead is a potent inhibitor of oncogenic transformation and is specific for MYC relative to resistant mutants and transformation-inducing oncogenes. This method is simple, inexpensive, and does not require protein modification, DNA binding, or the dimer partner MAX. This assay presents an opportunity for MYC inhibition researchers to discover unique scaffolds.

Indexed as

Drug DevelopmentHigh-Throughput Screening AssaysBinding SitesDose-Response Relationship, DrugFluorescent DyesHumansMolecular StructureProto-Oncogene Proteins c-mycStructure-Activity RelationshipFluorescent DyesProto-Oncogene Proteins c-mycDockingFluorescence competition assayHigh-throughput screeningHydrogen-deuterium exchange mass spectrometryMYCOncoprotein

Identifiers

PMID34130216
PMCPMC8279689
OpenAlexW3169713925

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.