Evidence map›Paper›PMID 34128967›Full record

ArticleThe Journal of cell biology2021

A global chromatin compaction pathway that represses germline gene expression during starvation.

Mezmur D Belew, Emilie Chien, Matthew Wong, W Matthew Michael

Open access · greenAbstract read
In one paragraph

Article in The Journal of cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. An atlas of thebioRxiv : the preprint server for biology · 2026
    Article
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  4. microPublication biology · 2026
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  5. Review
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  12. The Embryonic Origin of Primordial Germ Cells in the TardigradebioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Mezmur D BelewMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA.
Emilie ChienMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA.
Matthew WongMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA.
W Matthew MichaelMolecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA.ORCID 0000-0002-8535-5796
University of Southern California · US

Funding

Training in Developmental Biology, Stem Cells and RegenerationT32HD060549 · NICHD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Gage D Crump · 2011 to 2026
$2.5M
Molecular mechanisms for germline genome activation in C. elegansR01GM127477 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MICHAEL, MATTHEW · 2019 to 2022
$1.4M
NICHD NIH HHS T32 HD060549NIGMS NIH HHS R01 GM127477
6 · The paper itself

Abstract

While much is known about how transcription is controlled at individual genes, comparatively little is known about how cells regulate gene expression on a genome-wide level. Here, we identify a molecular pathway in the C. elegans germline that controls transcription globally in response to nutritional stress. We report that when embryos hatch into L1 larvae, they sense the nutritional status of their environment, and if food is unavailable, they repress gene expression via a global chromatin compaction (GCC) pathway. GCC is triggered by the energy-sensing kinase AMPK and is mediated by a novel mechanism that involves the topoisomerase II/condensin II axis acting upstream of heterochromatin assembly. When the GCC pathway is inactivated, then transcription persists during starvation. These results define a new mode of whole-genome control of transcription.

Indexed as

Gene Expression Regulation, DevelopmentalGenome, HelminthAMP-Activated Protein Kinase KinasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatinChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNA Topoisomerases, Type IIEmbryo, NonmammalianHistone AcetyltransferasesHistonesLarvaMaleOvumAMP-Activated Protein Kinase KinasesCaenorhabditis elegans Proteinscapg-2 protein, C elegansCEC-4 protein, C elegansChromatinChromosomal Proteins, Non-HistoneDNA Topoisomerases, Type IIHistone AcetyltransferasesHistonesHPL-2 protein, C elegansMYS-1 protein, C elegansProtein KinasesRNA, Small Interfering

Identifiers

PMID34128967
PMCPMC8210574
OpenAlexW3171987816

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.