Evidence map›Paper›PMID 34127777›Full record

ArticleNPJ digital medicine2021

Yet Another Automated Gleason Grading System (YAAGGS) by weakly supervised deep learning.

Yechan Mun, Inyoung Paik, Su-Jin Shin, Tae-Yeong Kwak, Hyeyoon Chang

Abstract read
In one paragraph

Article in NPJ digital medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yechan Mun *Deep Bio Inc., Seoul, South Korea.
Inyoung Paik *Deep Bio Inc., Seoul, South Korea.
Su-Jin ShinDepartment of Pathology, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, South Korea.
Tae-Yeong KwakDeep Bio Inc., Seoul, South Korea. tykwak@deepbio.co.kr.ORCID http://orcid.org/0000-0001-9171-7258
Hyeyoon ChangDeep Bio Inc., Seoul, South Korea. hychang@deepbio.co.kr.ORCID http://orcid.org/0000-0002-4274-4652

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gleason score contributes significantly in predicting prostate cancer outcomes and selecting the appropriate treatment option, which is affected by well-known inter-observer variations. We present a novel deep learning-based automated Gleason grading system that does not require extensive region-level manual annotations by experts and/or complex algorithms for the automatic generation of region-level annotations. A total of 6664 and 936 prostate needle biopsy single-core slides (689 and 99 cases) from two institutions were used for system discovery and validation, respectively. Pathological diagnoses were converted into grade groups and used as the reference standard. The grade group prediction accuracy of the system was 77.5% (95% confidence interval (CI): 72.3-82.7%), the Cohen's kappa score (κ) was 0.650 (95% CI: 0.570-0.730), and the quadratic-weighted kappa score (κ

Identifiers

PMID34127777
PMCPMC8203612

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.