Evidence map›Paper›PMID 34127677›Full record

SynthesisNature communications2021

A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.

Hélène Choquet, Ronald B Melles, Deepti Anand, Jie Yin, Gabriel Cuellar-Partida, Wei Wang, 23andMe Research Team, Thomas J Hoffmann, K Saidas Nair, Pirro G Hysi and 2 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 5 pooled it
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 5 syntheses or guidelines pooled it, 91 citations in OpenAlex.

  1. Pooled it
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  3. Association between vitamin D level and cataract: A systematic review and meta-analysis.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Hélène ChoquetKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA. Helene.Choquet@kp.org.ORCID 0000-0001-9839-8667
Ronald B MellesKPNC, Department of Ophthalmology, Redwood City, CA, USA.
Deepti AnandDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.ORCID 0000-0003-1720-9962
Jie YinKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA.
Gabriel Cuellar-Partida23andMe Inc, Sunnyvale, CA, USA.
Wei Wang23andMe Inc, Sunnyvale, CA, USA.ORCID 0000-0001-7358-6557
23andMe Research Team
Thomas J HoffmannInstitute for Human Genetics, UCSF, San Francisco, CA, USA.ORCID 0000-0001-6893-4449
K Saidas NairDepartments of Ophthalmology and Anatomy, School of Medicine, UCSF, San Francisco, CA, USA.ORCID 0000-0001-5309-9727
Pirro G HysiKing's College London, Section of Ophthalmology, School of Life Course Sciences, London, UK.ORCID 0000-0001-5752-2510
Salil A LachkeDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.ORCID 0000-0001-8845-010X
Eric JorgensonKaiser Permanente Northern California (KPNC), Division of Research, Oakland, CA, USA.ORCID 0000-0002-5829-8191
Kaiser Permanente · US23andMe (United States) · USUniversity of California, San Francisco · USUniversity of Delaware · USKing's College London · GB

Funding

A Resource for Genetic Epidemiology Research in Adult Health and AgingRC2AG036607 · NIA · KAISER FOUNDATION RESEARCH INSTITUTE · PI RISCH, NEIL J., SCHAEFER, CATHERINE ANN · 2009 to 2010
$24.8M
Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ULLIAN, ERIK M · 1985 to 2024
$16.8M
POST TRANSCRIPTIONAL CONTROL OF GENE EXPRESSION IN THE LENS (LENS GENE EXPRESSIONR01EY021505 · NEI · WASHINGTON UNIVERSITY · PI LACHKE, SALIL · 2011 to 2024
$5.3M
Determining Molecular and Cellular Mechanisms of GlaucomaR01EY022891 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NAIR, KAYARAT SAIDAS · 2013 to 2017
$2.0M
Genetic Etiology of Abdominal Hernia SusceptibilityR01DK116738 · NIDDK · KAISER FOUNDATION RESEARCH INSTITUTE · PI AHITUV, NADAV, CHOQUET, HELENE · 2018 to 2020
$1.8M
The Role of Genetic Risk Factors in Keratinocyte Carcinoma SusceptibilityR01CA241623 · NCI · KAISER FOUNDATION RESEARCH INSTITUTE · PI ASGARI, MARYAM MANDANA, CHOQUET, HELENE · 2020 to 2025
$1.7M
RNA-binding proteins in early eye development.R01EY029770 · NEI · UNIVERSITY OF DELAWARE · PI LACHKE, SALIL · 2019 to 2023
$1.7M
The Role of Refractive Error in the Etiology of GlaucomaR01EY027004 · NEI · KAISER FOUNDATION RESEARCH INSTITUTE · PI CHOQUET, HELENE · 2017 to 2020
$1.6M
Sequencing not required: Imputing rare variants into a cohort of 100,000 on agingR21AG046616 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOFFMANN, THOMAS · 2013 to 2014
$433k
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NCI NIH HHS R01 CA241623NEI NIH HHS P30 EY002162NEI NIH HHS R01 EY021505NEI NIH HHS R01 EY022891NEI NIH HHS R01 EY027004NEI NIH HHS R01 EY029770NIA NIH HHS R21 AG046616NIA NIH HHS RC2 AG036607NIDDK NIH HHS R01 DK116738
6 · The paper itself

Abstract

Cataract is the leading cause of blindness among the elderly worldwide and cataract surgery is one of the most common operations performed in the United States. As the genetic etiology of cataract formation remains unclear, we conducted a multiethnic genome-wide association meta-analysis, combining results from the GERA and UK Biobank cohorts, and tested for replication in the 23andMe research cohort. We report 54 genome-wide significant loci, 37 of which were novel. Sex-stratified analyses identified CASP7 as an additional novel locus specific to women. We show that genes within or near 80% of the cataract-associated loci are significantly expressed and/or enriched-expressed in the mouse lens across various spatiotemporal stages as per iSyTE analysis. Furthermore, iSyTE shows 32 candidate genes in the associated loci have altered gene expression in 9 different gene perturbation mouse models of lens defects/cataract, suggesting their relevance to lens biology. Our work provides further insight into the complex genetic architecture of cataract susceptibility.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyAgingAnimalsCaspase 7CataractCohort StudiesDisease Models, AnimalGene Expression RegulationHumansLens, CrystallineLogistic ModelsMiceMice, KnockoutMolecular EpidemiologyCASP7 protein, humanCasp7 protein, mouseCaspase 7RibonucleoproteinsTDRD7 protein, mouse

Identifiers

PMID34127677
PMCPMC8203611
OpenAlexW3171361629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.