Evidence map›Paper›PMID 34127663›Full record

ArticleNature communications2021

Engineering the protein dynamics of an ancestral luciferase.

Andrea Schenkmayerova, Gaspar P Pinto, Martin Toul, Martin Marek, Lenka Hernychova, Joan Planas-Iglesias, Veronika Daniel Liskova, Daniel Pluskal, Michal Vasina, Stephane Emond and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. A NovelInternational journal of molecular sciences · 2026
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  7. Review
  8. Article
  9. Article
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  12. Structural and energetic analysis of stabilizing indel mutations.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Exploring the Light-Emitting Agents inJournal of the American Chemical Society · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Andrea Schenkmayerova *International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.ORCID 0000-0003-0883-9866
Gaspar P Pinto *International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.
Martin Toul *International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.ORCID 0000-0002-3707-6899
Martin Marek *Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.ORCID 0000-0001-7220-5644
Lenka HernychovaResearch Centre for Applied Molecular Oncology, Masaryk Memorial Cancer Institute, Brno, Czech Republic.ORCID 0000-0002-4352-0626
Joan Planas-IglesiasInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.ORCID 0000-0002-6279-2483
Veronika Daniel LiskovaInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.
Daniel PluskalLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Michal VasinaInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.
Stephane EmondDepartment of Biochemistry, University of Cambridge, Cambridge, UK.ORCID 0000-0002-5160-0917
Mark DörrDepartment of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, Germany.
Radka ChaloupkovaLoschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
David BednarInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.
Zbynek ProkopInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic.
Florian HollfelderDepartment of Biochemistry, University of Cambridge, Cambridge, UK. fh111@cam.ac.uk.ORCID 0000-0002-1367-6312
Uwe T BornscheuerDepartment of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, Germany. uwe.bornscheuer@uni-greifswald.de.ORCID 0000-0003-0685-2696
Jiri DamborskyInternational Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic. jiri@chemi.muni.cz.ORCID 0000-0002-7848-8216

Funding

Biotechnology and Biological Sciences Research Council BB/L002469/1
6 · The paper itself

Abstract

Protein dynamics are often invoked in explanations of enzyme catalysis, but their design has proven elusive. Here we track the role of dynamics in evolution, starting from the evolvable and thermostable ancestral protein Anc

Indexed as

Molecular Dynamics SimulationProtein EngineeringAnimalsBinding SitesCatalysisEnzyme StabilityKineticsLuciferasesLuciferases, RenillaMammalsMiceMutagenesisMutationNIH 3T3 CellsProtein ConformationTemperatureLuciferasesLuciferases, Renilla

Identifiers

PMID34127663
PMCPMC8203615

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.