Evidence map›Paper›PMID 34127480›Full record

ArticleCancer discovery2021

Identification of Novel Therapeutic Targets for Fibrolamellar Carcinoma Using Patient-Derived Xenografts and Direct-from-Patient Screening.

Gadi Lalazar, David Requena, Lavoisier Ramos-Espiritu, Denise Ng, Patrick D Bhola, Ype P de Jong, Ruisi Wang, Nicole J C Narayan, Bassem Shebl, Solomon Levin and 26 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer discovery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. A Pan-Cancer Ex Vivo Drug Screen Atlas for Functional Precision Oncology.bioRxiv : the preprint server for biology · 2026
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  3. Review
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  15. A preclinical "magic bullet" against fibrolamellar hepatocellular carcinoma?Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  16. GalNAc-conjugated siRNA targeting the DNAJB1-PRKACA fusion junction in fibrolamellar hepatocellular carcinoma.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 13 institutions in 2 countries.

Gadi LalazarLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
David RequenaLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.ORCID 0000-0002-5968-1133
Lavoisier Ramos-EspirituHigh Throughput and Spectroscopy Resource Center, The Rockefeller University, New York, New York.
Denise NgLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Patrick D BholaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.
Ype P de JongDivision of Gastroenterology and Hepatology, Weill Cornell Medicine, New York, New York.ORCID 0000-0001-6357-2370
Ruisi WangLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Nicole J C NarayanLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Bassem SheblLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Solomon LevinLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Eleftherios MichailidisLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York.ORCID 0000-0002-9907-4346
Mohammad KabbaniLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York.
Koen O A VercauterenLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York.ORCID 0000-0003-1472-9938
Arlene M HurleyHospital Program Direction, The Rockefeller University, New York, New York.ORCID 0000-0003-0575-0233
Benjamin A FarberLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.ORCID 0000-0002-0148-759X
William J HammondLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.ORCID 0000-0002-6579-5794
James A SaltsmanLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Ethan M WeinbergDivision of Gastroenterology and Hepatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
J Fraser GlickmanHigh Throughput and Spectroscopy Resource Center, The Rockefeller University, New York, New York.ORCID 0000-0002-6706-4039
Barbara A LyonsDepartment of Chemistry and Biochemistry, New Mexico State University, Las Cruces, New Mexico.
Jessica EllisonDivision of Transplantation, Rush University Medical Center, Chicago, Illinois.
Erik SchaddeDepartment of Surgery, Division of Transplantation and Division of Surgical Oncology, Rush University Medical Center, Chicago, Illinois.
Martin HertlDivision of Transplantation, Rush University Medical Center, Chicago, Illinois.
Jennifer L LeitingDivision of Subspecialty General Surgery, Department of Surgery, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-5784-7937
Mark J TrutyDivision of Subspecialty General Surgery, Department of Surgery, Mayo Clinic, Rochester, Minnesota.
Rory L SmootDivision of Subspecialty General Surgery, Department of Surgery, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0001-8543-661X
Faith TierneyDivision of Abdominal Organ Transplantation, New York-Presbyterian/Columbia University, New York, New York.
Tomoaki KatoDivision of Abdominal Organ Transplantation, New York-Presbyterian/Columbia University, New York, New York.
Hans-Guido WendelCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Michael P LaQuagliaPediatric Surgery Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-7059-9851
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, New York.
Anthony LetaiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.
Philip CoffinoLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York.
Michael S TorbensonDivision of Anatomic Pathology, Mayo Clinic, Rochester, Minnesota.
Michael V OrtizDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, New York.
Sanford M SimonLaboratory of Cellular Biophysics, The Rockefeller University, New York, New York. simon@rockefeller.edu.
Rockefeller University · USMemorial Sloan Kettering Cancer Center · USMayo Clinic · USRush University Medical Center · USCornell University · USDana-Farber Cancer Institute · USHigh Throughput Biology (United States) · USNewYork–Presbyterian Hospital · USGhent University Hospital · BENew Mexico State University · USRockefeller University Hospital · USUniversity of Iowa Hospitals and Clinics · USUniversity of Pennsylvania · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Project 4: ImmunovirotherapyP50CA210964 · NCI · MAYO CLINIC ROCHESTER · PI Zongming Eric Chen · 2018 to 2026
$20.5M
MSK Paul Calabresi Career Development Award for Clinical OncologyK12CA184746 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Omar Abdel-Wahab, Simon N. Powell · 2015 to 2026
$8.3M
Reading mitochondrial apoptotic signaling to identify active cancer therapeuticsR35CA242427 · NCI · DANA-FARBER CANCER INST · PI LETAI, ANTHONY G · 2019 to 2025
$7.0M
Modeling human hepatotropic infections in complex tissue organoidsR01DK085713 · NIDDK · ROCKEFELLER UNIVERSITY · PI BHATIA, SANGEETA N., RICE, CHARLES M · 2009 to 2013
$5.6M
What differences between the chimeric fusion oncoprotein DNAJB1-PRKACA and native kinase PRKACA lead to transformation in the childhood cancer, fibrolamellar hepatocellular carcinoma?U54CA243126 · NCI · ROCKEFELLER UNIVERSITY · PI SIMON, SANFORD M · 2019 to 2023
$5.4M
(PQ5) Investigation of intertumoral and intratumoral heterogeneity of mitochondrial apoptotic sensitivityR01CA205967 · NCI · DANA-FARBER CANCER INST · PI LETAI, ANTHONY G · 2016 to 2019
$2.0M
Modeling alcohol toxicity in human hepatocytesR01AA027327 · NIAAA · WEILL MEDICAL COLL OF CORNELL UNIV · PI DE JONG, YPE PETER · 2019 to 2023
$1.9M
The role of innate immune response in HBV infection and persistenceF32DK107164 · NIDDK · ROCKEFELLER UNIVERSITY · PI MICHAILIDIS, ELEFTHERIOS · 2015 to 2017
$179k
NCATS NIH HHS UL1 TR001866NCI NIH HHS K12 CA184746NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA210964NCI NIH HHS R01 CA205967NCI NIH HHS R35 CA242427NCI NIH HHS U54 CA243126NIAAA NIH HHS R01 AA027327NIDDK NIH HHS F32 DK107164NIDDK NIH HHS R01 DK085713
6 · The paper itself

Abstract

To repurpose therapeutics for fibrolamellar carcinoma (FLC), we developed and validated patient-derived xenografts (PDX) from surgical resections. Most agents used clinically and inhibitors of oncogenes overexpressed in FLC showed little efficacy on PDX. A high-throughput functional drug screen found primary and metastatic FLC were vulnerable to clinically available inhibitors of TOPO1 and HDAC and to napabucasin. Napabucasin's efficacy was mediated through reactive oxygen species and inhibition of translation initiation, and specific inhibition of eIF4A was effective. The sensitivity of each PDX line inversely correlated with expression of the antiapoptotic protein Bcl-xL, and inhibition of Bcl-xL synergized with other drugs. Screening directly on cells dissociated from patient resections validated these results. This demonstrates that a direct functional screen on patient tumors provides therapeutically informative data within a clinically useful time frame. Identifying these novel therapeutic targets and combination therapies is an urgent need, as effective therapeutics for FLC are currently unavailable. SIGNIFICANCE: Therapeutics informed by genomics have not yielded effective therapies for FLC. A functional screen identified TOPO1, HDAC inhibitors, and napabucasin as efficacious and synergistic with inhibition of Bcl-xL. Validation on cells dissociated directly from patient tumors demonstrates the ability for functional precision medicine in a solid tumor.

Indexed as

Gene Expression Regulation, NeoplasticXenograft Model Antitumor AssaysAniline CompoundsAnimalsAntineoplastic AgentsBenzofuransCarcinoma, HepatocellularFemaleHumansLiver NeoplasmsMaleMiceNaphthoquinonesSulfonamidesAniline CompoundsAntineoplastic AgentsBenzofuransnapabucasinNaphthoquinonesnavitoclaxSulfonamides

Identifiers

PMID34127480
PMCPMC8734228
OpenAlexW3173023287

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.