Evidence map›Paper›PMID 34126113›Full record

ArticleProgress in biophysics and molecular biology2022

It's clearly the heart! Optical transparency, cardiac tissue imaging, and computer modelling.

Gregory B Sands, Jesse L Ashton, Mark L Trew, David Baddeley, Richard D Walton, David Benoist, Igor R Efimov, Nicolas P Smith, Olivier Bernus, Bruce H Smaill

Abstract read
In one paragraph

Article in Progress in biophysics and molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Light-Sheet Imaging to Reveal Cardiac Structure in Rodent Hearts.Journal of visualized experiments : JoVE · 2024
    Article
  4. Review
  5. Article
  6. Myocardial mesostructure and mesofunction.American journal of physiology. Heart and circulatory physiology · 2022
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gregory B SandsAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand. Electronic address: g.sands@auckland.ac.nz.
Jesse L AshtonAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand.
Mark L TrewAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand.
David BaddeleyAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand; Department of Cell Biology, Yale University, New Haven CT, 06520, USA.
Richard D WaltonIHU Liryc, Fondation Bordeaux Université, Bordeaux, France; Univ. Bordeaux, Inserm, Centre de Recherche Cardio-Thoracique, U1045, 33000, Bordeaux, France.
David BenoistIHU Liryc, Fondation Bordeaux Université, Bordeaux, France; Univ. Bordeaux, Inserm, Centre de Recherche Cardio-Thoracique, U1045, 33000, Bordeaux, France.
Igor R EfimovIHU Liryc, Fondation Bordeaux Université, Bordeaux, France; Department of Biomedical Engineering, The George Washington University, Washington DC, 20052, USA.
Nicolas P SmithAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand; Queensland University of Technology, Brisbane 4000, Australia.
Olivier BernusIHU Liryc, Fondation Bordeaux Université, Bordeaux, France; Univ. Bordeaux, Inserm, Centre de Recherche Cardio-Thoracique, U1045, 33000, Bordeaux, France.
Bruce H SmaillAuckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand.

Funding

Comprehensive Structural and Functional Mapping of the Mammalian Cardiac Nervous SystemOT2OD023848 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EFIMOV, IGOR R, FOWLKES, CHARLESS · 2016 to 2021
$21.4M
NIH HHS OT2 OD023848
6 · The paper itself

Abstract

Recent developments in clearing and microscopy enable 3D imaging with cellular resolution up to the whole organ level. These methods have been used extensively in neurobiology, but their uptake in other fields has been much more limited. Application of this approach to the human heart and effective use of the data acquired present challenges of scale and complexity. Four interlinked issues need to be addressed: 1) efficient clearing and labelling of heart tissue, 2) fast microscopic imaging of human-scale samples, 3) handling and processing of multi-terabyte 3D images, and 4) extraction of structural information in computationally tractable structure-based models of cardiac function. Preliminary studies show that each of these requirements can be achieved with the appropriate application and development of existing technologies.

Indexed as

Imaging, Three-DimensionalMicroscopyComputersComputer SimulationHeartHumansOptical ImagingCardiac tissueExtended-volume imagingImage processingMicroscopyNetwork modellingTissue clearing

Identifiers

PMID34126113
PMCPMC12076525

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.