Evidence map›Paper›PMID 34125358›Full record

ArticleJournal of computer-aided molecular design2021

COSMO-RS predictions of logP in the SAMPL7 blind challenge.

Judith Warnau, Karin Wichmann, Jens Reinisch

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of computer-aided molecular design, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Benchmarking pJournal of chemical information and modeling · 2026
    Article
  4. Article
  5. Article
  6. pKJournal of computational chemistry · 2025
    Article
  7. Article
  8. Integrated Molecular Modeling and Machine Learning for Drug Design.Journal of chemical theory and computation · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Evaluation of log P, pKJournal of computer-aided molecular design · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Judith WarnauDassault Systemes Deutschland GmbH, Imbacher Weg 46, 51379, Leverkusen, Germany. judith.warnau@3ds.com.ORCID http://orcid.org/0000-0002-4450-7909
Karin WichmannDassault Systemes Deutschland GmbH, Imbacher Weg 46, 51379, Leverkusen, Germany.ORCID http://orcid.org/0000-0001-5743-1141
Jens ReinischDassault Systemes Deutschland GmbH, Imbacher Weg 46, 51379, Leverkusen, Germany.ORCID http://orcid.org/0000-0002-2817-1405

Funding

Advancing predictive physical modeling through focused development of model systems to drive new modeling innovationsR01GM124270 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2018 to 2021
$1.5M
NIGMS NIH HHS R01 GM124270
6 · The paper itself

Abstract

We applied the COSMO-RS method to predict the partition coefficient logP between water and 1-octanol for 22 small drug like molecules within the framework of the SAMPL7 blind challenge. We carefully collected a set of thermodynamically meaningful microstates, including tautomeric forms of the neutral species, and calculated the logP using the current COSMOtherm implementation on the most accurate level. With this approach, COSMO-RS was ranked as the 6st most accurate method (Measured by the mean absolute error (MAE) of 0.57) over all 17 ranked submissions. We achieved a root mean square deviation (RMSD) of 0.78. The largest deviations from experimental values are exhibited by five SAMPL molecules (SM), which seem to be shifted in most SAMPL7 contributions. In context with previous SAMPL challenges, COSMO-RS demonstrates a wide range of applicability and one of the best in class reliability and accuracy among the physical methods.

Indexed as

Models, ChemicalQuantum TheoryThermodynamics1-OctanolComputer SimulationReproducibility of ResultsSolubilitySolventsWater1-OctanolSolventsWater1-Octanol–water partition coefficientCOSMO-RSCOSMOthermlogP prediction

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.