Evidence map›Paper›PMID 34124159›Full record

ArticleFrontiers in molecular biosciences2021

Substitution of a Surface-Exposed Residue Involved in an Allosteric Network Enhances Tryptophan Synthase Function in Cells.

Rebecca N D'Amico, Yuliana K Bosken, Kathleen F O'Rourke, Alec M Murray, Woudasie Admasu, Chia-En A Chang, David D Boehr

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Solution-state nuclear magnetic resonance studies of theBiochemistry and biophysics reports · 2026
    Article
  2. Article
  3. Article
  4. Machine learning and protein allostery.Trends in biochemical sciences · 2023
    Review
  5. Design and engineering of allosteric communications in proteins.Current opinion in structural biology · 2022
    Review
  6. Allosteric regulation of substrate channeling:Frontiers in molecular biosciences · 2022
    Review
  7. Structural Basis for Allostery in PLP-dependent Enzymes.Frontiers in molecular biosciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rebecca N D'AmicoDepartment of Chemistry, The Pennsylvania State University, University Park, PA, United States.
Yuliana K BoskenDepartment of Chemistry, The University of California Riverside, Riverside, CA, United States.
Kathleen F O'RourkeDepartment of Chemistry, The Pennsylvania State University, University Park, PA, United States.
Alec M MurrayDepartment of Chemistry, The Pennsylvania State University, University Park, PA, United States.
Woudasie AdmasuDepartment of Chemistry, The Pennsylvania State University, University Park, PA, United States.
Chia-En A ChangDepartment of Chemistry, The University of California Riverside, Riverside, CA, United States.
David D BoehrDepartment of Chemistry, The Pennsylvania State University, University Park, PA, United States.
Pennsylvania State University · USUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Networks of noncovalent amino acid interactions propagate allosteric signals throughout proteins. Tryptophan synthase (TS) is an allosterically controlled bienzyme in which the indole product of the alpha subunit (αTS) is transferred through a 25 Å hydrophobic tunnel to the active site of the beta subunit (βTS). Previous nuclear magnetic resonance and molecular dynamics simulations identified allosteric networks in αTS important for its function. We show here that substitution of a distant, surface-exposed network residue in αTS enhances tryptophan production, not by activating αTS function, but through dynamically controlling the opening of the indole channel and stimulating βTS activity. While stimulation is modest, the substitution also enhances cell growth in a tryptophan-auxotrophic strain of

Indexed as

allosteryconformational dynamicsenzyme regulationmolecular dynamicsnuclear magnetic resonancesubstrate channelingTIM barrel

Identifiers

PMID34124159
PMCPMC8187860
OpenAlexW3164108246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.