Evidence map›Paper›PMID 34123246›Full record

ArticleChemical science2019

Expanding medicinal chemistry into 3D space: metallofragments as 3D scaffolds for fragment-based drug discovery.

Christine N Morrison, Kathleen E Prosser, Ryjul W Stokes, Anna Cordes, Nils Metzler-Nolte, Seth M Cohen

Erratum issuedAbstract read
In one paragraph

Article in Chemical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  11. Iridium(III) carbene complexes as potent girdin inhibitors against metastatic cancers.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Review
  13. Article
  14. Article
  15. Metals to combat antimicrobial resistance.Nature reviews. Chemistry · 2023
    Review
  16. Article
  17. Article
  18. Scale-Up of a Rh-Catalyzed Asymmetric spOrganic process research & development · 2022
    Review
  19. Article
  20. A Ruthenium(II) Polypyridyl Complex Disrupts Actin Cytoskeleton Assembly and Blocks Cytokinesis.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Christine N MorrisonDepartment of Chemistry and Biochemistry, University of California San Diego La Jolla CA 92093 USA scohen@ucsd.edu.ORCID https://orcid.org/0000-0002-4180-8407
Kathleen E ProsserDepartment of Chemistry and Biochemistry, University of California San Diego La Jolla CA 92093 USA scohen@ucsd.edu.
Ryjul W StokesDepartment of Chemistry and Biochemistry, University of California San Diego La Jolla CA 92093 USA scohen@ucsd.edu.ORCID https://orcid.org/0000-0001-5965-5421
Anna CordesLehrstuhl für Anorganische Chemie 1, Bioanorganische Chemie, Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany.
Nils Metzler-NolteLehrstuhl für Anorganische Chemie 1, Bioanorganische Chemie, Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum Germany.ORCID https://orcid.org/0000-0001-8111-9959
Seth M CohenDepartment of Chemistry and Biochemistry, University of California San Diego La Jolla CA 92093 USA scohen@ucsd.edu.ORCID https://orcid.org/0000-0002-5233-2280

Funding

Metallofragments as 3-Dimensional Scaffolds for Fragment-Based Drug DiscoveryR21AI138934 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI THEODORAKIS, EMMANUEL A · 2018 to 2019
$402k
Artificial Enzymes: Development of Biomimetic Catalysts in Metal-Organic FrameworksF32GM125233 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MORRISON, CHRISTINE N · 2017 to 2019
$97k
NIAID NIH HHS R21 AI138934NIGMS NIH HHS F32 GM125233
6 · The paper itself

Abstract

Fragment-based drug discovery (FBDD) is a powerful strategy for the identification of new bioactive molecules. FBDD relies on fragment libraries, generally of modest size, but of high chemical diversity. Although good chemical diversity in FBDD libraries has been achieved in many respects, achieving shape diversity - particularly fragments with three-dimensional (3D) structures - has remained challenging. A recent analysis revealed that >75% of all conventional, organic fragments are predominantly 1D or 2D in shape. However, 3D fragments are desired because molecular shape is one of the most important factors in molecular recognition by a biomolecule. To address this challenge, the use of inert metal complexes, so-called 'metallofragments' (mFs), to construct a 3D fragment library is introduced. A modest library of 71 compounds has been prepared with rich shape diversity as gauged by normalized principle moment of inertia (PMI) analysis. PMI analysis shows that these metallofragments occupy an area of fragment space that is unique and highly underrepresented when compared to conventional organic fragment libraries that are comprised of orders of magnitude more molecules. The potential value of this metallofragment library is demonstrated by screening against several different types of proteins, including an antiviral, an antibacterial, and an anticancer target. The suitability of the metallofragments for future hit-to-lead development was validated through the determination of IC

Identifiers

PMID34123246
PMCPMC8148059

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.