Evidence map›Paper›PMID 34121910›Full record

ArticleDiversity & distributions2020

The risks of using molecular biodiversity data for incidental detection of species of concern.

John A Darling, Xavier Pochon, Cathryn L Abbott, Graeme J Inglis, Anastasija Zaiko

Abstract read
In one paragraph

Article in Diversity & distributions, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Integrating invasive species risk assessment into environmental DNA metabarcoding reference libraries.Ecological applications : a publication of the Ecological Society of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

John A DarlingCenter for Environmental Measurement & Modeling, United States Environmental Protection Agency, Research Triangle Park, NC, USA.ORCID 0000-0002-4776-9533
Xavier PochonCoastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand.
Cathryn L AbbottDepartment of Fisheries and Oceans, Pacific Biological Station, Nanaimo, British Columbia, Canada.
Graeme J InglisNational Institute of Water & Atmospheric Research Ltd., Christchurch, New Zealand.
Anastasija ZaikoCoastal and Freshwater Group, Cawthron Institute, Nelson, New Zealand.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Incidental detection of species of concern (e.g., invasive species, pathogens, threatened and endangered species) during biodiversity assessments based on high-throughput DNA sequencing holds significant risks in the absence of rigorous, fit-for-purpose data quality and reporting standards. Molecular biodiversity data are predominantly collected for ecological studies and thus are generated to common quality assurance standards. However, the detection of certain species of concern in these data would likely elicit interest from end users working in biosecurity or other surveillance contexts (e.g., pathogen detection in health-related fields), for which more stringent quality control standards are essential to ensure that data are suitable for informing decision-making and can withstand legal or political challenges. We suggest here that data quality and reporting criteria are urgently needed to enable clear identification of those studies that may be appropriately applied to surveillance contexts. In the interim, more pointed disclaimers on uncertainties associated with the detection and identification of species of concern may be warranted in published studies. This is not only to ensure the utility of molecular biodiversity data for consumers, but also to protect data generators from uncritical and potentially ill-advised application of their science in decision-making.

Indexed as

biodiversity monitoringbiosecuritydata qualityhigh-throughput sequencingincidental detectionspecies of concern

Identifiers

PMID34121910
PMCPMC8193820

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.