Evidence map›Paper›PMID 34120252›Full record

ArticleVirus genes2021

Genetic and phylogenetic characterization of polycistronic dsRNA segment-10 of bluetongue virus isolates from India between 1985 and 2011.

Sanchay Kumar Biswas, Bimalendu Mondal, Karam Chand, Sushmita Nautiyal, Saravanan Subramaniam, Karam Pal Singh, Vivek Kumar Gupta, Muthannan Andavar Ramakrishnan

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Article in Virus genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Genome and evolution of Tibet orbivirus, TIBOV (genusFrontiers in cellular and infection microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sanchay Kumar BiswasEastern Regional Station, ICAR-Indian Veterinary Research Institute, Kolkata, 700037, West Bengal, India. sanchaybiswas@gmail.com.ORCID http://orcid.org/0000-0003-3016-2126
Bimalendu MondalEastern Regional Station, ICAR-Indian Veterinary Research Institute, Kolkata, 700037, West Bengal, India.
Karam ChandDivision of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar Campus, Nainital, 263138, Uttarakhand, India.
Sushmita NautiyalDivision of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar Campus, Nainital, 263138, Uttarakhand, India.
Saravanan SubramaniamICAR-Directorate of Foot and Mouth Disease, Mukteswar, Nainital, Uttarakhand, 263138, India.
Karam Pal SinghICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, Uttar Pradesh, India.
Vivek Kumar GuptaICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122, Uttar Pradesh, India.
Muthannan Andavar RamakrishnanDivision of Virology, ICAR-Indian Veterinary Research Institute, Mukteswar Campus, Nainital, 263138, Uttarakhand, India.
Indian Veterinary Research Institute · INProject Directorate on Foot and Mouth Disease · IN

Funding

Indian Council of Agricultural Research Project Code: No. 13(1)/2000-ASR-IV
6 · The paper itself

Abstract

The smallest polycistronic dsRNA segment-10 (S10) of bluetongue virus (BTV) encodes NS3/3A and putative NS5. The S10 sequence data of 46 Indian BTV field isolates obtained between 1985 and 2011 were determined and compared with the cognate sequences of global BTV strains. The largest ORF on S10 encodes NS3 (229 aa) and an amino-terminal truncated form of the protein (NS3A) and a putative NS5 (50-59 aa) due to alternate translation initiation site. The overall mean distance of the global NS3 was 0.1106 and 0.0269 at nt and deduced aa sequence, respectively. The global BTV strains formed four major clusters. The major cluster of Indian BTV strains was closely related to the viruses reported from Australia and China. A minor sub-cluster of Indian BTV strains were closely related to the USA strains and a few of the Indian strains were similar to the South African reference and vaccine strains. The global trait association of phylogenetic structure indicates the evolution of the global BTV S10 was not homogenous but rather represents a moderate level of geographical divergence. There was no evidence of an association between the virus and the host species, suggesting a random spread of the viruses. Conflicting selection pressure on the alternate coding sequences of the S10 was evident where NS3/3A might have evolved through strong purifying (negative) selection and NS5 through a positive selection. The presence of multiple positively selected codons on the putative NS5 may be advantageous for adaptation of the virus though their precise role is unknown.

Indexed as

AnimalsAustraliaBluetongueBluetongue virusChinaDouble Stranded RNA VirusesGenetic VariationHumansIndiaPhylogenyRNA, Double-StrandedSequence Analysis, DNASheepViral Nonstructural ProteinsRNA, Double-StrandedViral Nonstructural ProteinsBluetongue virusNS3/NS3ANS5Phylogenetic analysisSegment-10

Identifiers

PMID34120252
OpenAlexW3170393120

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.