Evidence map›Paper›PMID 34119693›Full record

ArticleBiochimica et biophysica acta. Proteins and proteomics2021

Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound.

Uchenna Emechebe, David Giraud, Azzdine Y Ammi, Kristin L Scott, Jon M Jacobs, Jason E McDermott, Igor V Dykan, Nabil J Alkayed, Anthony P Barnes, Sanjiv Kaul and 1 more

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Proteins and proteomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Uchenna EmechebeKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA.
David GiraudKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA.
Azzdine Y AmmiKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA.
Kristin L ScottDepartment of Anesthesiology & Perioperative Medicine, Oregon Health & Science University, Portland, OR 97239, USA.
Jon M JacobsBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Jason E McDermottBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Igor V DykanKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA.
Nabil J AlkayedKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Anesthesiology & Perioperative Medicine, Oregon Health & Science University, Portland, OR 97239, USA.
Anthony P BarnesKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Anesthesiology & Perioperative Medicine, Oregon Health & Science University, Portland, OR 97239, USA; Department of Cell, Developmental and Cancer Biology, Oregon Health & Science University, Portland, OR 97239, USA.
Sanjiv KaulKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA.
Catherine M DavisKnight Cardiovascular Institute, Oregon Health & Science University, Portland, OR 97239, USA; Department of Anesthesiology & Perioperative Medicine, Oregon Health & Science University, Portland, OR 97239, USA. Electronic address: davis@ohsu.edu.
Oregon Health & Science University · USPacific Northwest National Laboratory · US

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Neuroinflammatory Mechanisms of Vascular Cognitive ImpairmentRF1AG058273 · NIA · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALKAYED, NABIL J · 2017 to 2023
$4.2M
NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Myocardial infarction and subsequent therapeutic interventions activate numerous intracellular cascades in every constituent cell type of the heart. Endothelial cells produce several protective compounds in response to therapeutic ultrasound, under both normoxic and ischemic conditions. How endothelial cells sense ultrasound and convert it to a beneficial biological response is not known. We adopted a global, unbiased phosphoproteomics approach aimed at understanding how endothelial cells respond to ultrasound. Here, we use primary cardiac endothelial cells to explore the cellular signaling events underlying the response to ischemia-like cellular injury and ultrasound exposure in vitro. Enriched phosphopeptides were analyzed with a high mass accuracy liquid chromatrography (LC) - tandem mass spectrometry (MS/MS) proteomic platform, yielding multiple alterations in both total protein levels and phosphorylation events in response to ischemic injury and ultrasound. Application of pathway algorithms reveals numerous protein networks recruited in response to ultrasound including those regulating RNA splicing, cell-cell interactions and cytoskeletal organization. Our dataset also permits the informatic prediction of potential kinases responsible for the modifications detected. Taken together, our findings begin to reveal the endothelial proteomic response to ultrasound and suggest potential targets for future studies of the protective effects of ultrasound in the ischemic heart.

Indexed as

Amino Acid SequenceAnimalsChromatography, LiquidEndocardiumEndothelial CellsHeartIschemiaMaleMiceMice, Inbred C57BLMyocardial IschemiaPhosphoproteinsPhosphorylationPrimary Cell CultureProteomeProteomicsPhosphoproteinsProteomeEndothelial cellHeartIschemiaPhosphoproteomicsProteomicsUltrasound

Identifiers

PMID34119693
PMCPMC9629031
OpenAlexW3169518918

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.