Evidence map›Paper›PMID 34119630›Full record

ArticleThe Journal of nutritional biochemistry2021

Gene Expression of CRAL_TRIO Family Proteins modulated by Vitamin E Deficiency in Zebrafish (Danio Rerio).

Alexander T Watt, Brian Head, Scott W Leonard, Robyn L Tanguay, Maret G Traber

Open access · greenAbstract read
In one paragraph

Article in The Journal of nutritional biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Alexander T WattLinus Pauling Institute, Oregon State University, Corvallis, Oregon; Integrative Biology Program, Oregon State University, Corvallis, Oregon.
Brian HeadLinus Pauling Institute, Oregon State University, Corvallis, Oregon; Molecular and Cell Biology Program.
Scott W LeonardLinus Pauling Institute, Oregon State University, Corvallis, Oregon.
Robyn L TanguayDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, Oregon.
Maret G TraberLinus Pauling Institute, Oregon State University, Corvallis, Oregon; School of Biological and Population Health Sciences, Oregon State University, Corvallis, Oregon. Electronic address: maret.traber@oregonstate.edu.
Oregon State University · US

Funding

Zebrafish Biomedical Research Facility CoreP30ES030287 · NIEHS · OREGON STATE UNIVERSITY · PI Molly L Kile · 2020 to 2026
$9.8M
NIEHS NIH HHS P30 ES030287
6 · The paper itself

Abstract

An evaluation of the impact of vitamin E deficiency on expression of the alpha-tocopherol transfer protein (α-TTP) and related CRAL_TRIO genes was undertaken using livers from adult zebrafish based on the hypothesis that increased lipid peroxidation would modulate gene expression. Zebrafish were fed either a vitamin E sufficient (E+) or deficient (E-) diet for 9 months, then fish were euthanized, and livers were harvested. Livers from the E+ relative to E- fish contained 40-times more α-tocopherol (P <0.0001) and one fourth the malondialdehyde (P = 0.0153). RNA was extracted from E+ and E- livers, then subject to evaluation of gene expression of ttpa and other genes of the CRAL_TRIO family, genes of antioxidant markers, and genes related to lipid metabolism. Ttpa expression was not altered by vitamin E status. However, one member of the CRAL_TRIO family, tyrosine-protein phosphatase non-receptor type 9 gene (ptpn9a), showed a 2.4-fold increase (P = 0.029) in E- relative to E+ livers. Further, we identified that the gene for choline kinase alpha (chka) showed a 3.0-fold increase (P = 0.010) in E- livers. These outcomes are consistent with our previous findings that show vitamin E deficiency increased lipid peroxidation causing increases in phospholipid turnover.

Indexed as

Gene Expressionalpha-TocopherolAnimalsAntioxidantsCarrier ProteinsCholine KinaseLipid MetabolismLiverMalondialdehydeProtein Tyrosine Phosphatases, Non-ReceptorVitamin E DeficiencyZebrafishZebrafish Proteinsalpha-Tocopherolalpha-tocopherol transfer proteinAntioxidantsCarrier ProteinsCholine KinaseMalondialdehydeProtein Tyrosine Phosphatases, Non-ReceptorPTPN9a protein, zebrafishZebrafish ProteinsAlpha-tocopherol transfer protein (α-TTP)CholineCRAL_TRIOPtpn9aSEC14

Identifiers

PMID34119630
PMCPMC10129037
OpenAlexW3167952438

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.