Evidence map›Paper›PMID 34118903›Full record

ArticleBMC veterinary research2021

Analysis of ORF5 sequences of Porcine Reproductive and Respiratory Syndrome virus (PRRSV) circulating within swine farms in Costa Rica.

Mónica Guzmán, Ronald Meléndez, Carlos Jiménez, Marta Piche, Emily Jiménez, Bernal León, Juan M Cordero, Lisbeth Ramirez-Carvajal, Alberto Uribe, Arie Van Nes and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Mónica Guzmán *Department of Veterinary Diagnostics (DDV), Veterinary Services National Laboratories (LANASEVE), Animal Health National Service (SENASA), Ministry of Livestock and Agriculture (MAG), Heredia, Costa Rica.
Ronald Meléndez *Department of Population Health Sciences, University of Utrecht, Utrecht, The Netherlands. ronaldma03@gmail.com.
Carlos JiménezDepartment of Virology, School of Veterinary Medicine (EMV), Universidad Nacional (UNA), Heredia, Costa Rica.
Marta PicheDepartment of Virology, School of Veterinary Medicine (EMV), Universidad Nacional (UNA), Heredia, Costa Rica.
Emily JiménezFaryvet Company, Heredia, Costa Rica.
Bernal LeónDepartment of Veterinary Diagnostics (DDV), Veterinary Services National Laboratories (LANASEVE), Animal Health National Service (SENASA), Ministry of Livestock and Agriculture (MAG), Heredia, Costa Rica.
Juan M CorderoDepartment of Veterinary Diagnostics (DDV), Veterinary Services National Laboratories (LANASEVE), Animal Health National Service (SENASA), Ministry of Livestock and Agriculture (MAG), Heredia, Costa Rica.
Lisbeth Ramirez-CarvajalDepartment of Veterinary Diagnostics (DDV), Veterinary Services National Laboratories (LANASEVE), Animal Health National Service (SENASA), Ministry of Livestock and Agriculture (MAG), Heredia, Costa Rica. Lizramirez@gmail.com.
Alberto UribeBoehringer Ingelheim, 16300, Xochimilco, Mexico.
Arie Van NesDepartment of Population Health Sciences, University of Utrecht, Utrecht, The Netherlands. a.vannes@uu.nl.
Arjan StegemanDepartment of Population Health Sciences, University of Utrecht, Utrecht, The Netherlands.
Juan José RomeroConsultoría Regional de Investigación en Producción Animal Sostenible (CRIPAS), School of Veterinary Medicine (EMV), Universidad Nacional (UNA), Heredia, Costa Rica.
Universidad Nacional · CRUtrecht University · NLBoehringer Ingelheim (Mexico) · MX

Funding

Ministerio de Ciencia Tecnología y Telecomunicaciones (CR) PND-018-15-2
6 · The paper itself

Abstract

backgroundWorldwide, Porcine Reproductive and Respiratory Syndrome (PRRS) is among the diseases that cause the highest economic impact in modern pig production. PRRS was first detected in Costa Rica in 1996 and has since then severely affected the local swine industry. Studies of the molecular characterization of circulating strains, correlation with clinical records, and associations with pathogens associated with Porcine Respiratory Disease Complex (PRDC) have not been done in Costa Rica.

resultsSequencing and phylogenetic analysis of ORF5 proved that PRRSV-2 was the only species detected in all locations analyzed. These sequences were grouped into three clusters. When comparing samples from San Jose, Alejuela, and Puntarenas to historical isolates of the previously described lineages (1 to 9), it has been shown that these were closely related to each other and belonged to Lineage 5, along with the samples from Heredia. Intriguingly, samples from Cartago clustered in a separate clade, phylogenetically related to Lineage 1. Epitope analysis conducted on the GP5 sequence of field isolates from Costa Rica revealed seven peptides with at least 80% amino acid sequence identity with previously described and experimentally validated immunogenic regions. Previously described epitopes A, B, and C, were detected in the Santa Barbara-Heredia isolate.

conclusionsOur data suggest that the virus has three distinct origins or introductions to the country. Future studies will elucidate how recently introduced vaccines will shape the evolutionary change of circulating field strains.

Indexed as

Amino Acid SequenceAnimalsCosta RicaEpitopesOpen Reading FramesPhylogenyPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSwineEpitopesCosta RicaGlycoprotein 5(GP5)Open reading frame 5 (ORF5)phylogenetic treePorcine Reproductive and Respiratory Syndrome (PRRS)Porcine Respiratory Disease Complex (PRDC)

Identifiers

PMID34118903
PMCPMC8196928
OpenAlexW3166321252

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.